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F08G12.5 RING-type domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 184211, updated on 2-Nov-2024

Summary

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Official Symbol
F08G12.5
Official Full Name
RING-type domain-containing protein
Primary source
WormBase:WBGene00008588
Locus tag
CELE_F08G12.5
See related
AllianceGenome:WB:WBGene00008588
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable metal ion binding activity. Predicted to be located in membrane. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See F08G12.5 in Genome Data Viewer
Location:
chromosome: X
Exon count:
4
Sequence:
Chromosome: X; NC_003284.9 (11308689..11310285, complement)

Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene RasGEF domain protein Neighboring gene Rab-like protein 6 Neighboring gene von Hippel-Lindau tumor suppressor homolog Neighboring gene Laminin N-terminal domain-containing protein Neighboring gene Neuropeptide-Like Protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003284.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Interactions within the ubiquitin pathway of Caenorhabditis elegans. Gudgen M, et al. Biochem Biophys Res Commun, 2004 Dec 10. PMID 15530417
  2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
RING-type domain-containing protein
NP_509890.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003284.9 Reference assembly

    Range
    11308689..11310285 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_077489.5 → NP_509890.2  RING-type domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_509890.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q19214
    Conserved Domains (2) summary
    cd00162
    Location:40 → 90
    RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
    cl17238
    Location:36 → 91
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
Nucleotide Protein
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