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clec-55 C-type LECtin [ Caenorhabditis elegans ]

Gene ID: 184218, updated on 28-Oct-2024

Summary

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Official Symbol
clec-55
Official Full Name
C-type LECtin
Primary source
WormBase:WBGene00008597
Locus tag
CELE_F08H9.9
See related
AllianceGenome:WB:WBGene00008597
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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Genomic context

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See clec-55 in Genome Data Viewer
Location:
chromosome: V
Exon count:
6
Sequence:
Chromosome: V; NC_003283.11 (14479279..14482317)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene C-type LECtin Neighboring gene CUB domain-containing protein Neighboring gene Uncharacterized protein Neighboring gene Protein ORF59 Neighboring gene Ground-like domain-containing protein Neighboring gene Ovule protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Determining Toxic Potencies of Water-Soluble Contaminants in Wastewater Influents and Effluent Using Gene Expression Profiling in C. elegans as a Bioanalytical Tool. Karengera A, et al. Arch Environ Contam Toxicol, 2022 Oct. PMID 36190544, Free PMC Article
  2. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article
  3. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
  4. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
  5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

General protein information

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Preferred Names
C-type LECtin
NP_506591.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    14479279..14482317
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_074190.3 → NP_506591.1  C-type LECtin [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_506591.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    G5EDN7
    Conserved Domains (3) summary
    smart00034
    Location:26 → 148
    CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)
    smart00042
    Location:280 → 378
    CUB; Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein
    cd00041
    Location:166 → 266
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
Nucleotide Protein
Heading Accession and Version

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