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F09B12.5 Low-density lipoprotein receptor-related protein 2 [ Caenorhabditis elegans ]

Gene ID: 184225, updated on 2-Nov-2024

Summary

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Official Symbol
F09B12.5
Official Full Name
Low-density lipoprotein receptor-related protein 2
Primary source
WormBase:WBGene00008609
Locus tag
CELE_F09B12.5
See related
AllianceGenome:WB:WBGene00008609
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be active in plasma membrane. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See F09B12.5 in Genome Data Viewer
Location:
chromosome: X
Exon count:
6
Sequence:
Chromosome: X; NC_003284.9 (15084695..15088285)

Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene Ovule protein Neighboring gene Uncharacterized protein Neighboring gene ncRNA Neighboring gene UBX domain-containing protein Neighboring gene ncRNA Neighboring gene Serine/threonine-protein kinase flr-4 Neighboring gene Movement protein Neighboring gene Putative phospholipase B-like 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003284.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Component Evidence Code Pubs
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
Low-density lipoprotein receptor-related protein 2
NP_510507.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003284.9 Reference assembly

    Range
    15084695..15088285
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_078106.4 → NP_510507.2  Low-density lipoprotein receptor-related protein 2 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_510507.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    G5EBV9
    Conserved Domains (2) summary
    smart00192
    Location:22 → 54
    LDLa; Low-density lipoprotein receptor domain class A
    cd00112
    Location:83 → 106
    LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...
Nucleotide Protein
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