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far-5 Fatty-acid and retinol-binding protein 1 [ Caenorhabditis elegans ]

Gene ID: 184522, updated on 2-Nov-2024

Summary

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Official Symbol
far-5
Official Full Name
Fatty-acid and retinol-binding protein 1
Primary source
WormBase:WBGene00001389
Locus tag
CELE_F15B9.3
See related
AllianceGenome:WB:WBGene00001389
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable lipid binding activity. Is expressed in male. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See far-5 in Genome Data Viewer
Location:
chromosome: V
Exon count:
2
Sequence:
Chromosome: V; NC_003283.11 (12995569..12996836)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene YggT family protein Neighboring gene Delta-like protein Neighboring gene Fatty-acid and retinol-binding protein 1 Neighboring gene DUF148 domain-containing protein Neighboring gene FH2 domain-containing protein Neighboring gene ncRNA Neighboring gene tRNA-Ala

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The FAR protein family of the nematode Caenorhabditis elegans. Differential lipid binding properties, structural characteristics, and developmental regulation. Garofalo A, et al. J Biol Chem, 2003 Mar 7. PMID 12502713
  2. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
  3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables lipid binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Fatty-acid and retinol-binding protein 1
NP_001129891.1
  • Confirmed by transcript evidence
NP_506250.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    12995569..12996836
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_073849.6 → NP_506250.2  Fatty-acid and retinol-binding protein 1 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_506250.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q19480
    Conserved Domains (1) summary
    pfam05823
    Location:28 → 169
    Gp-FAR-1; Nematode fatty acid retinoid binding protein (Gp-FAR-1)

  2. NM_001136419.4 → NP_001129891.1  Fatty-acid and retinol-binding protein 1 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001129891.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    B5U8N0
    Conserved Domains (1) summary
    pfam05823
    Location:1 → 62
    Gp-FAR-1; Nematode fatty acid retinoid binding protein (Gp-FAR-1)
Nucleotide Protein
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