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F21D5.4 HTH CENPB-type domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 184768, updated on 2-Nov-2024

Summary

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Official Symbol
F21D5.4
Official Full Name
HTH CENPB-type domain-containing protein
Primary source
WormBase:WBGene00009009
Locus tag
CELE_F21D5.4
See related
AllianceGenome:WB:WBGene00009009
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable sequence-specific DNA binding activity. Orthologous to human POGK (pogo transposable element derived with KRAB domain). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See F21D5.4 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
3
Sequence:
Chromosome: IV; NC_003282.8 (8738087..8739101)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene OTU domain-containing protein Neighboring gene Multicopper oxidase;Plastocyanin-like domain-containing protein Neighboring gene Uncharacterized protein Neighboring gene Small ribosomal subunit protein mS33 Neighboring gene Ribonuclease H2 subunit B wHTH domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003282.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Simonis N, et al. Nat Methods, 2009 Jan. PMID 19123269, Free PMC Article
  2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
HTH CENPB-type domain-containing protein
NP_501504.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    8738087..8739101
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_069103.4 → NP_501504.1  HTH CENPB-type domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_501504.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q19682
    Conserved Domains (2) summary
    smart00674
    Location:84 → 143
    CENPB; Putative DNA-binding domain in centromere protein B, mouse jerky and transposases
    pfam09607
    Location:21 → 65
    BrkDBD; Brinker DNA-binding domain
Nucleotide Protein
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