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npax-1 Paired domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 184779, updated on 2-Nov-2024

Summary

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Official Symbol
npax-1
Official Full Name
Paired domain-containing protein
Primary source
WormBase:WBGene00017664
Locus tag
CELE_F21D12.5
See related
AllianceGenome:WB:WBGene00017664
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable DNA binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Is expressed in head neurons. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See npax-1 in Genome Data Viewer
Location:
chromosome: II
Exon count:
5
Sequence:
Chromosome: II; NC_003280.10 (7328736..7331324, complement)

Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene Uncharacterized protein Neighboring gene Amino acid transporter transmembrane domain-containing protein Neighboring gene NR LBD domain-containing protein Neighboring gene Endoplasmic reticulum chaperone BiP homolog;Heat shock 70 kDa protein D

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003280.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Pax genes in Caenorhabditis elegans: a new twist. Hobert O, et al. Trends Genet, 1999 Jun. PMID 10354580
  2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in intracellular organelle IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Paired domain-containing protein
NP_495533.2
  • Partially confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003280.10 Reference assembly

    Range
    7328736..7331324 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_063132.3 → NP_495533.2  Paired domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_495533.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q19677
    Conserved Domains (1) summary
    cl21459
    Location:60 → 122
    HTH; Helix-turn-helix domains
Nucleotide Protein
Heading Accession and Version

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