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phf-34 PHD-type domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 184793, updated on 2-Nov-2024

Summary

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Official Symbol
phf-34
Official Full Name
PHD-type domain-containing protein
Primary source
WormBase:WBGene00009025
Locus tag
CELE_F21G4.4
See related
AllianceGenome:WB:WBGene00009025
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable metal ion binding activity. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See phf-34 in Genome Data Viewer
Location:
chromosome: X
Exon count:
5
Sequence:
Chromosome: X; NC_003284.9 (9897344..9899476, complement)

Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene Multidrug resistance-associated protein 1 Neighboring gene Solute carrier organic anion transporter family member Neighboring gene Methyltransf_21 domain-containing protein Neighboring gene ncRNA Neighboring gene C2H2-type domain-containing protein Neighboring gene HunTingTin gene family member;Serine/threonine-protein kinase TOR

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003284.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A transcriptional cofactor regulatory network for the C. elegans intestine. Horowitz BB, et al. G3 (Bethesda), 2023 Jul 5. PMID 37119809, Free PMC Article
  2. Extensive rewiring and complex evolutionary dynamics in a C. elegans multiparameter transcription factor network. Reece-Hoyes JS, et al. Mol Cell, 2013 Jul 11. PMID 23791784, Free PMC Article
  3. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Simonis N, et al. Nat Methods, 2009 Jan. PMID 19123269, Free PMC Article
  4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
PHD-type domain-containing protein
NP_509661.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003284.9 Reference assembly

    Range
    9897344..9899476 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_077260.7 → NP_509661.1  PHD-type domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_509661.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q93548
    Conserved Domains (1) summary
    smart00249
    Location:201 → 245
    PHD; PHD zinc finger
Nucleotide Protein
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