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F25D1.5 DeHydrogenases, Short chain [ Caenorhabditis elegans ]

Gene ID: 184922, updated on 2-Nov-2024

Summary

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Official Symbol
F25D1.5
Official Full Name
DeHydrogenases, Short chain
Primary source
WormBase:WBGene00009110
Locus tag
CELE_F25D1.5
See related
AllianceGenome:WB:WBGene00009110
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable nucleotide binding activity and oxidoreductase activity. Orthologous to human HSD17B14 (hydroxysteroid 17-beta dehydrogenase 14). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See F25D1.5 in Genome Data Viewer
Location:
chromosome: V
Exon count:
3
Sequence:
Chromosome: V; NC_003283.11 (10545741..10546783, complement)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Single-stranded DNA-binding protein Neighboring gene Acid-sensing ion channel 1 Neighboring gene Serpentine receptor class delta-34 Neighboring gene Transmembrane protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Simonis N, et al. Nat Methods, 2009 Jan. PMID 19123269, Free PMC Article
  2. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article
  3. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
  4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
  
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
DeHydrogenases, Short chain
NP_505704.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    10545741..10546783 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_073303.6 → NP_505704.1  DeHydrogenases, Short chain [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_505704.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q19774
    Conserved Domains (2) summary
    cd05364
    Location:4 → 263
    SDR_c11; classical (c) SDR, subgroup 11
    COG1028
    Location:3 → 259
    FabG; NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family [Lipid transport and metabolism, Secondary metabolites biosynthesis, transport and catabolism, General function prediction only]
Nucleotide Protein
Heading Accession and Version

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