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lhfp-4 Lipoma HMGIC fusion partner-like 3 protein [ Caenorhabditis elegans ]

Gene ID: 184971, updated on 2-Nov-2024

Summary

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Official Symbol
lhfp-4
Official Full Name
Lipoma HMGIC fusion partner-like 3 protein
Primary source
WormBase:WBGene00009155
Locus tag
CELE_F26D10.11
See related
AllianceGenome:WB:WBGene00009155
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be involved in sensory perception of sound. Predicted to be located in membrane. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 67. Orthologous to several human genes including LHFPL4 (LHFPL tetraspan subfamily member 4). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See lhfp-4 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
6
Sequence:
Chromosome: IV; NC_003282.8 (17275581..17276865)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene Aamy domain-containing protein;alpha-glucosidase Neighboring gene glutamine synthetase Neighboring gene C-type lectin domain-containing protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003282.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
  2. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
  3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Process Evidence Code Pubs
involved_in sensory perception of sound IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
Lipoma HMGIC fusion partner-like 3 protein
NP_503066.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    17275581..17276865
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_070665.3 → NP_503066.1  Lipoma HMGIC fusion partner-like 3 protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_503066.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9XVU1
    Conserved Domains (1) summary
    pfam10242
    Location:19 → 183
    L_HGMIC_fpl; Lipoma HMGIC fusion partner-like protein
Nucleotide Protein
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