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lmd-1 LysM domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 185715, updated on 2-Nov-2024

Summary

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Official Symbol
lmd-1
Official Full Name
LysM domain-containing protein
Primary source
WormBase:WBGene00009665
Locus tag
CELE_F43G9.2
See related
AllianceGenome:WB:WBGene00009665
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be located in membrane. Orthologous to several human genes including LYSMD4 (LysM domain containing 4). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See lmd-1 in Genome Data Viewer
Location:
chromosome: I
Exon count:
5
Sequence:
Chromosome: I; NC_003279.8 (8609921..8611066)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Vesicle transport protein Neighboring gene putative isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial Neighboring gene ncRNA Neighboring gene PWWP domain-containing protein Neighboring gene Mitochondrial coenzyme A transporter SLC25A42 Neighboring gene Cleavage and polyadenylation specificity factor subunit 5 Neighboring gene Uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003279.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Defect-buffering cellular plasticity increases robustness of metazoan embryogenesis. Xiao L, et al. Cell Syst, 2022 Aug 17. PMID 35882226
  2. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Simonis N, et al. Nat Methods, 2009 Jan. PMID 19123269, Free PMC Article
  3. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
  4. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
  5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
LysM domain-containing protein
NP_001122475.1
  • Confirmed by transcript evidence
NP_001122476.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    8609921..8611066
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001129004.3 → NP_001122476.1  LysM domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001122476.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A5JYU7
    Conserved Domains (1) summary
    smart00257
    Location:43 → 84
    LysM; Lysin motif

  2. NM_001129003.3 → NP_001122475.1  LysM domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001122475.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A5JYU6
    Conserved Domains (1) summary
    smart00257
    Location:43 → 84
    LysM; Lysin motif
Nucleotide Protein
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