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Pde1c phosphodiesterase 1C [ Mus musculus (house mouse) ]

Gene ID: 18575, updated on 2-Nov-2024

Summary

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Official Symbol
Pde1cprovided by MGI
Official Full Name
phosphodiesterase 1Cprovided by MGI
Primary source
MGI:MGI:108413
See related
Ensembl:ENSMUSG00000004347 AllianceGenome:MGI:108413
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Enables 3',5'-cyclic-AMP phosphodiesterase activity and 3',5'-cyclic-GMP phosphodiesterase activity. Acts upstream of or within sensory perception of smell. Located in cilium and lysosome. Is expressed in several structures, including alimentary system; central nervous system; genitourinary system; limb; and sensory organ. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness 74. Orthologous to human PDE1C (phosphodiesterase 1C). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in testis adult (RPKM 4.7), cerebellum adult (RPKM 3.2) and 8 other tissues See more
Orthologs
human all
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Genomic context

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See Pde1c in Genome Data Viewer
Location:
6 B3; 6 27.65 cM
Exon count:
29
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (56046783..56629590, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (56069798..56652510, complement)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_15984 Neighboring gene protein phosphatase 1, regulatory subunit 17 Neighboring gene STARR-seq mESC enhancer starr_15985 Neighboring gene ribosomal protein L17 pseudogene Neighboring gene STARR-seq mESC enhancer starr_15986 Neighboring gene STARR-positive B cell enhancer mm9_chr6:56183581-56183882 Neighboring gene STARR-seq mESC enhancer starr_15987 Neighboring gene STARR-seq mESC enhancer starr_15988 Neighboring gene predicted gene, 34753 Neighboring gene STARR-seq mESC enhancer starr_15989 Neighboring gene predicted gene, 24709 Neighboring gene predicted gene, 22493 Neighboring gene CapStarr-seq enhancer MGSCv37_chr6:56654682-56654884 Neighboring gene STARR-seq mESC enhancer starr_15990 Neighboring gene STARR-positive B cell enhancer ABC_E679 Neighboring gene LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated Neighboring gene AVL9 cell migration associated

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The calmodulin-dependent phosphodiesterase gene PDE1C encodes several functionally different splice variants in a tissue-specific manner. Yan C, et al. J Biol Chem, 1996 Oct 11. PMID 8810348
  2. Calcium-dependent phosphodiesterase 1C inhibits renin release from isolated juxtaglomerular cells. Ortiz-Capisano MC, et al. Am J Physiol Regul Integr Comp Physiol, 2009 Nov. PMID 19741056, Free PMC Article
  3. Multiprotein Complex With TRPC (Transient Receptor Potential-Canonical) Channel, PDE1C (Phosphodiesterase 1C), and A2R (Adenosine A2 Receptor) Plays a Critical Role in Regulating Cardiomyocyte cAMP and Survival. Zhang Y, et al. Circulation, 2018 Oct 30. PMID 29871977, Free PMC Article
  4. PDE1C deficiency antagonizes pathological cardiac remodeling and dysfunction. Knight WE, et al. Proc Natl Acad Sci U S A, 2016 Nov 8. PMID 27791092, Free PMC Article
  5. Cyclic nucleotide phosphodiesterase 1C contributes to abdominal aortic aneurysm. Zhang C, et al. Proc Natl Acad Sci U S A, 2021 Aug 3. PMID 34312235, Free PMC Article

See all (40) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Cyclic nucleotide phosphodiesterase 1C contributes to abdominal aortic aneurysm.
    Title: Cyclic nucleotide phosphodiesterase 1C contributes to abdominal aortic aneurysm.
  2. By whole-mount immunofluorescence on postnatal day 3 mouse cochlea, we show its expression in outer (OHC) and inner (IHC) hair cells cytosol co-localizing with Lamp-1 in lysosomes. Furthermore, we provide evidence that the variant alters the PDE1C hydrolytic activity for both cyclic adenosine monophosphate (cAMP) and cyclic guanosine monophosphate (cGMP).
    Title: A dominant variant in the PDE1C gene is associated with nonsyndromic hearing loss.
  3. Cardiac Pde1C is a direct transcriptional target of PPARalpha.
    Title: Mouse Cardiac Pde1C Is a Direct Transcriptional Target of Pparα.
  4. Ligation injury caused a marked increase in neointimal and medial thickening in PDE1C+/+ mice. Injury-induced neointimal formation was significantly attenuated by PDE1C deficiency (knockout mice) or PDE1 inhibition in vivo.
    Title: Role of cAMP-phosphodiesterase 1C signaling in regulating growth factor receptor stability, vascular smooth muscle cell growth, migration, and neointimal hyperplasia.
  5. PDE1C is expressed in isolated juxtaglomerular cells, and contributes to calcium's inhibitory modulation of renin release from juxtaglomerular cells.
    Title: Calcium-dependent phosphodiesterase 1C inhibits renin release from isolated juxtaglomerular cells.
Submit: New GeneRIF Correction

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (3) 
  • Targeted (2)  1 citation

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables 3',5'-cyclic-AMP phosphodiesterase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables 3',5'-cyclic-AMP phosphodiesterase activity ISO
Inferred from Sequence Orthology
more info
  
enables 3',5'-cyclic-GMP phosphodiesterase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables 3',5'-cyclic-GMP phosphodiesterase activity ISO
Inferred from Sequence Orthology
more info
  
enables cAMP binding ISO
Inferred from Sequence Orthology
more info
  
enables calmodulin binding IEA
Inferred from Electronic Annotation
more info
  
enables calmodulin-activated 3',5'-cyclic-GMP phosphodiesterase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables calmodulin-activated 3',5'-cyclic-GMP phosphodiesterase activity ISO
Inferred from Sequence Orthology
more info
 PubMed 
enables calmodulin-activated dual specificity 3',5'-cyclic-GMP, 3',5'-cyclic-AMP phosphodiesterase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables calmodulin-activated dual specificity 3',5'-cyclic-GMP, 3',5'-cyclic-AMP phosphodiesterase activity ISO
Inferred from Sequence Orthology
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in cAMP-mediated signaling IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in negative regulation of insulin secretion involved in cellular response to glucose stimulus ISO
Inferred from Sequence Orthology
more info
  
acts_upstream_of_or_within response to calcium ion ISO
Inferred from Sequence Orthology
more info
 PubMed 
acts_upstream_of_or_within sensory perception of smell IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within sensory perception of smell IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cilium IDA
Inferred from Direct Assay
more info
 PubMed 
located_in lysosome IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in neuronal cell body IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in neuronal cell body ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C
Names
3',5'-cyclic-AMP phosphodiesterase
3',5'-cyclic-GMP phosphodiesterase
calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C
cam-PDE 1C
dual specificity Calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C
NP_001020739.1
NP_001153424.1
NP_001153425.1
NP_001153427.1
NP_001153428.1
NP_001153429.1
NP_001153432.1
NP_001342404.1
NP_001397182.1
NP_001397183.1
NP_001397184.1
NP_001397185.1
NP_001397186.1
NP_001397187.1
NP_035184.1
XP_006505793.1
XP_006505797.1
XP_006505798.3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001025568.3 → NP_001020739.1  dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform b

    See identical proteins and their annotated locations for NP_001020739.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) represents the longest transcript. Variants 2 and 8 encode the same isoform (b).
    Source sequence(s)
    AC079274, AC079956
    Consensus CDS
    CCDS51785.1
    UniProtKB/TrEMBL
    Q3USZ6, Q5D0E7
    Related
    ENSMUSP00000131350.2, ENSMUST00000166102.8
    Conserved Domains (3) summary
    PTZ00121
    Location:543 → 628
    PTZ00121; MAEBL; Provisional
    pfam00233
    Location:227 → 455
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
    pfam08499
    Location:86 → 142
    PDEase_I_N; 3'5'-cyclic nucleotide phosphodiesterase N-terminal

  2. NM_001159952.2 → NP_001153424.1  dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform c

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks an in-frame exon in the 5' coding region, compared to variant 2. This results in a shorter protein (isoform c), compared to isoform b.
    Source sequence(s)
    AC079274, AC079956
    Consensus CDS
    CCDS51783.1
    UniProtKB/TrEMBL
    E9Q7V6, Q3USZ6
    Related
    ENSMUSP00000130139.2, ENSMUST00000164037.3
    Conserved Domains (2) summary
    pfam00233
    Location:218 → 446
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
    pfam08499
    Location:77 → 133
    PDEase_I_N; 3'5'-cyclic nucleotide phosphodiesterase N-terminal

  3. NM_001159953.2 → NP_001153425.1  dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform d

    See identical proteins and their annotated locations for NP_001153425.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) uses an alternate exon structure in the 3' coding region compared to variant 2. It encodes isoform d, which is longer and has a distinct C-terminus, compared to isoform b.
    Source sequence(s)
    AC079274, AC079365, AC079956
    Consensus CDS
    CCDS51784.1
    UniProtKB/Swiss-Prot
    Q62045, Q64338, Q8BSV6
    UniProtKB/TrEMBL
    Q3USZ6
    Related
    ENSMUSP00000046601.8, ENSMUST00000044505.14
    Conserved Domains (2) summary
    pfam00233
    Location:227 → 455
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
    pfam08499
    Location:86 → 142
    PDEase_I_N; 3'5'-cyclic nucleotide phosphodiesterase N-terminal

  4. NM_001159955.2 → NP_001153427.1  dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform a

    See identical proteins and their annotated locations for NP_001153427.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (7) differs in the 5' UTR and uses an alternate 3' exon structure compared to variant 2. Variants 1, 7 and 9 encode the same isoform (a), which is longer and has a distinct C-terminus, compared to isoform b.
    Source sequence(s)
    AC044804, AC079274, AC079365, AC079956
    Consensus CDS
    CCDS20170.1
    UniProtKB/TrEMBL
    Q3USZ6
    Related
    ENSMUSP00000128364.2, ENSMUST00000168944.8
    Conserved Domains (3) summary
    pfam00233
    Location:227 → 445
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
    pfam08499
    Location:86 → 142
    PDEase_I_N; 3'5'-cyclic nucleotide phosphodiesterase N-terminal
    cl26511
    Location:543 → 633
    Neuromodulin_N; Gap junction protein N-terminal region

  5. NM_001159956.2 → NP_001153428.1  dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform f

    See identical proteins and their annotated locations for NP_001153428.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (6) differs in the 5' UTR, 5' coding region, and 3' coding region, compared to variant 2. This results in distinct N- and C-termini and a shorter protein (isoform f), compared to isoform b.
    Source sequence(s)
    AC044804, AC079365, AC079956
    Consensus CDS
    CCDS51786.1
    UniProtKB/TrEMBL
    Q3USZ6, Q9D5W0
    Related
    ENSMUSP00000133170.2, ENSMUST00000170774.8
    Conserved Domains (2) summary
    pfam00233
    Location:190 → 418
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
    pfam08499
    Location:49 → 105
    PDEase_I_N; 3'5'-cyclic nucleotide phosphodiesterase N-terminal

  6. NM_001159957.2 → NP_001153429.1  dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform e

    See identical proteins and their annotated locations for NP_001153429.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) differs in the 5' UTR and 5' coding region but maintains the reading frame, compared to variant 2. This results in a distinct N-terminus and shorter protein (isoform e), compared to isoform b.
    Source sequence(s)
    AC044804, AC079274, AC079956
    Consensus CDS
    CCDS51787.1
    UniProtKB/TrEMBL
    Q3USZ6, Q8CDV2
    Related
    ENSMUSP00000131892.2, ENSMUST00000166890.8
    Conserved Domains (2) summary
    pfam00233
    Location:199 → 427
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
    pfam08499
    Location:58 → 114
    PDEase_I_N; 3'5'-cyclic nucleotide phosphodiesterase N-terminal

  7. NM_001159960.2 → NP_001153432.1  dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform b

    See identical proteins and their annotated locations for NP_001153432.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (8) differs in the 5' UTR, compared to variant 2. Variants 2 and 8 encode the same isoform (b).
    Source sequence(s)
    AC044804, AC079274, AC079956
    Consensus CDS
    CCDS51785.1
    UniProtKB/TrEMBL
    Q3USZ6, Q5D0E7
    Related
    ENSMUSP00000129185.2, ENSMUST00000164752.8
    Conserved Domains (3) summary
    PTZ00121
    Location:543 → 628
    PTZ00121; MAEBL; Provisional
    pfam00233
    Location:227 → 455
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
    pfam08499
    Location:86 → 142
    PDEase_I_N; 3'5'-cyclic nucleotide phosphodiesterase N-terminal

  8. NM_001355475.2 → NP_001342404.1  dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform a

    Status: VALIDATED

    Description
    Transcript Variant: This variant (9) uses an alternate 3' exon structure compared to variant 2. Variants 1, 7 and 9 encode the same isoform (a), which is longer and has a distinct C-terminus, compared to isoform b.
    Source sequence(s)
    AC079274, AC079365, AC079956
    Consensus CDS
    CCDS20170.1
    UniProtKB/TrEMBL
    Q3USZ6
    Conserved Domains (3) summary
    pfam00233
    Location:227 → 445
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
    pfam08499
    Location:86 → 142
    PDEase_I_N; 3'5'-cyclic nucleotide phosphodiesterase N-terminal
    cl26511
    Location:543 → 633
    Neuromodulin_N; Gap junction protein N-terminal region

  9. NM_001410253.1 → NP_001397182.1  dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform b

    Status: VALIDATED

    Source sequence(s)
    AC079274, AC079956
    UniProtKB/TrEMBL
    Q5D0E7

  10. NM_001410254.1 → NP_001397183.1  dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform b

    Status: VALIDATED

    Source sequence(s)
    AC044804, AC079274, AC079956
    UniProtKB/TrEMBL
    Q5D0E7

  11. NM_001410255.1 → NP_001397184.1  dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform g

    Status: VALIDATED

    Source sequence(s)
    AC044804, AC079956, AC122847

  12. NM_001410256.1 → NP_001397185.1  dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform h

    Status: VALIDATED

    Source sequence(s)
    AC044804, AC079365, AC079956

  13. NM_001410257.1 → NP_001397186.1  dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform i

    Status: VALIDATED

    Source sequence(s)
    AC044804, AC079365, AC079956

  14. NM_001410258.1 → NP_001397187.1  dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform j

    Status: VALIDATED

    Source sequence(s)
    AC044804, AC079956

  15. NM_011054.5 → NP_035184.1  dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform a

    See identical proteins and their annotated locations for NP_035184.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) differs in the 5' UTR and uses an alternate 3' exon structure compared to variant 2. Variants 1, 7 and 9 encode the same isoform (a), which is longer and has a distinct C-terminus, compared to isoform b.
    Source sequence(s)
    AC079274, AC079365, AC079956
    Consensus CDS
    CCDS20170.1
    UniProtKB/TrEMBL
    Q3USZ6
    Related
    ENSMUSP00000109966.3, ENSMUST00000114327.9
    Conserved Domains (3) summary
    pfam00233
    Location:227 → 445
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
    pfam08499
    Location:86 → 142
    PDEase_I_N; 3'5'-cyclic nucleotide phosphodiesterase N-terminal
    cl26511
    Location:543 → 633
    Neuromodulin_N; Gap junction protein N-terminal region

RNA

  1. NR_176965.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC044804, AC079274, AC079365, AC079956

  2. NR_176966.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC044804, AC079365, AC079956

  3. NR_176967.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC044804, AC079365, AC079956

  4. NR_176968.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC079274, AC079365, AC079956

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    56046783..56629590 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006505730.5 → XP_006505793.1  dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform X1

    UniProtKB/TrEMBL
    A0A5F8MPG4
    Related
    ENSMUSP00000158960.2, ENSMUST00000239143.2
    Conserved Domains (3) summary
    PTZ00121
    Location:698 → 788
    PTZ00121; MAEBL; Provisional
    pfam00233
    Location:382 → 610
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
    pfam08499
    Location:241 → 297
    PDEase_I_N; 3'5'-cyclic nucleotide phosphodiesterase N-terminal

  2. XM_006505734.2 → XP_006505797.1  dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform X3

    UniProtKB/TrEMBL
    A0A0N4SWG4
    Related
    ENSMUSP00000145508.2, ENSMUST00000203372.3
    Conserved Domains (3) summary
    PTZ00121
    Location:603 → 693
    PTZ00121; MAEBL; Provisional
    pfam00233
    Location:287 → 515
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
    pfam08499
    Location:146 → 202
    PDEase_I_N; 3'5'-cyclic nucleotide phosphodiesterase N-terminal

  3. XM_006505735.3 → XP_006505798.3  dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform X4

    UniProtKB/TrEMBL
    Q3USZ6
    Conserved Domains (3) summary
    PTZ00121
    Location:537 → 627
    PTZ00121; MAEBL; Provisional
    pfam00233
    Location:221 → 449
    PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
    pfam08499
    Location:80 → 136
    PDEase_I_N; 3'5'-cyclic nucleotide phosphodiesterase N-terminal

RNA

  1. XR_003956167.1 RNA Sequence

  2. XR_003956169.1 RNA Sequence

  3. XR_003956168.1 RNA Sequence

  4. XR_003956172.1 RNA Sequence

  5. XR_003956171.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q64338.2 GenPept UniProtKB/Swiss-Prot:Q64338

Gene LinkOut

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