NEW
Try the new Transcript table
These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001025568.3 → NP_001020739.1 dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform b
See identical proteins and their annotated locations for NP_001020739.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) represents the longest transcript. Variants 2 and 8 encode the same isoform (b).
- Source sequence(s)
-
AC079274, AC079956
- Consensus CDS
-
CCDS51785.1
- UniProtKB/TrEMBL
- Q3USZ6, Q5D0E7
- Related
- ENSMUSP00000131350.2, ENSMUST00000166102.8
- Conserved Domains (3) summary
-
- PTZ00121
Location:543 → 628
- PTZ00121; MAEBL; Provisional
- pfam00233
Location:227 → 455
- PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
- pfam08499
Location:86 → 142
- PDEase_I_N; 3'5'-cyclic nucleotide phosphodiesterase N-terminal
-
NM_001159952.2 → NP_001153424.1 dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform c
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) lacks an in-frame exon in the 5' coding region, compared to variant 2. This results in a shorter protein (isoform c), compared to isoform b.
- Source sequence(s)
-
AC079274, AC079956
- Consensus CDS
-
CCDS51783.1
- UniProtKB/TrEMBL
- E9Q7V6, Q3USZ6
- Related
- ENSMUSP00000130139.2, ENSMUST00000164037.3
- Conserved Domains (2) summary
-
- pfam00233
Location:218 → 446
- PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
- pfam08499
Location:77 → 133
- PDEase_I_N; 3'5'-cyclic nucleotide phosphodiesterase N-terminal
-
NM_001159953.2 → NP_001153425.1 dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform d
See identical proteins and their annotated locations for NP_001153425.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) uses an alternate exon structure in the 3' coding region compared to variant 2. It encodes isoform d, which is longer and has a distinct C-terminus, compared to isoform b.
- Source sequence(s)
-
AC079274, AC079365, AC079956
- Consensus CDS
-
CCDS51784.1
- UniProtKB/Swiss-Prot
- Q62045, Q64338, Q8BSV6
- UniProtKB/TrEMBL
-
Q3USZ6
- Related
- ENSMUSP00000046601.8, ENSMUST00000044505.14
- Conserved Domains (2) summary
-
- pfam00233
Location:227 → 455
- PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
- pfam08499
Location:86 → 142
- PDEase_I_N; 3'5'-cyclic nucleotide phosphodiesterase N-terminal
-
NM_001159955.2 → NP_001153427.1 dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform a
See identical proteins and their annotated locations for NP_001153427.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (7) differs in the 5' UTR and uses an alternate 3' exon structure compared to variant 2. Variants 1, 7 and 9 encode the same isoform (a), which is longer and has a distinct C-terminus, compared to isoform b.
- Source sequence(s)
-
AC044804, AC079274, AC079365, AC079956
- Consensus CDS
-
CCDS20170.1
- UniProtKB/TrEMBL
-
Q3USZ6
- Related
- ENSMUSP00000128364.2, ENSMUST00000168944.8
- Conserved Domains (3) summary
-
- pfam00233
Location:227 → 445
- PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
- pfam08499
Location:86 → 142
- PDEase_I_N; 3'5'-cyclic nucleotide phosphodiesterase N-terminal
- cl26511
Location:543 → 633
- Neuromodulin_N; Gap junction protein N-terminal region
-
NM_001159956.2 → NP_001153428.1 dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform f
See identical proteins and their annotated locations for NP_001153428.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (6) differs in the 5' UTR, 5' coding region, and 3' coding region, compared to variant 2. This results in distinct N- and C-termini and a shorter protein (isoform f), compared to isoform b.
- Source sequence(s)
-
AC044804, AC079365, AC079956
- Consensus CDS
-
CCDS51786.1
- UniProtKB/TrEMBL
- Q3USZ6, Q9D5W0
- Related
- ENSMUSP00000133170.2, ENSMUST00000170774.8
- Conserved Domains (2) summary
-
- pfam00233
Location:190 → 418
- PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
- pfam08499
Location:49 → 105
- PDEase_I_N; 3'5'-cyclic nucleotide phosphodiesterase N-terminal
-
NM_001159957.2 → NP_001153429.1 dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform e
See identical proteins and their annotated locations for NP_001153429.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (5) differs in the 5' UTR and 5' coding region but maintains the reading frame, compared to variant 2. This results in a distinct N-terminus and shorter protein (isoform e), compared to isoform b.
- Source sequence(s)
-
AC044804, AC079274, AC079956
- Consensus CDS
-
CCDS51787.1
- UniProtKB/TrEMBL
- Q3USZ6, Q8CDV2
- Related
- ENSMUSP00000131892.2, ENSMUST00000166890.8
- Conserved Domains (2) summary
-
- pfam00233
Location:199 → 427
- PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
- pfam08499
Location:58 → 114
- PDEase_I_N; 3'5'-cyclic nucleotide phosphodiesterase N-terminal
-
NM_001159960.2 → NP_001153432.1 dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform b
See identical proteins and their annotated locations for NP_001153432.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (8) differs in the 5' UTR, compared to variant 2. Variants 2 and 8 encode the same isoform (b).
- Source sequence(s)
-
AC044804, AC079274, AC079956
- Consensus CDS
-
CCDS51785.1
- UniProtKB/TrEMBL
- Q3USZ6, Q5D0E7
- Related
- ENSMUSP00000129185.2, ENSMUST00000164752.8
- Conserved Domains (3) summary
-
- PTZ00121
Location:543 → 628
- PTZ00121; MAEBL; Provisional
- pfam00233
Location:227 → 455
- PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
- pfam08499
Location:86 → 142
- PDEase_I_N; 3'5'-cyclic nucleotide phosphodiesterase N-terminal
-
NM_001355475.2 → NP_001342404.1 dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform a
Status: VALIDATED
- Description
- Transcript Variant: This variant (9) uses an alternate 3' exon structure compared to variant 2. Variants 1, 7 and 9 encode the same isoform (a), which is longer and has a distinct C-terminus, compared to isoform b.
- Source sequence(s)
-
AC079274, AC079365, AC079956
- Consensus CDS
-
CCDS20170.1
- UniProtKB/TrEMBL
-
Q3USZ6
- Conserved Domains (3) summary
-
- pfam00233
Location:227 → 445
- PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
- pfam08499
Location:86 → 142
- PDEase_I_N; 3'5'-cyclic nucleotide phosphodiesterase N-terminal
- cl26511
Location:543 → 633
- Neuromodulin_N; Gap junction protein N-terminal region
-
NM_001410253.1 → NP_001397182.1 dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform b
Status: VALIDATED
- Source sequence(s)
-
AC079274, AC079956
- UniProtKB/TrEMBL
-
Q5D0E7
-
NM_001410254.1 → NP_001397183.1 dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform b
Status: VALIDATED
- Source sequence(s)
-
AC044804, AC079274, AC079956
- UniProtKB/TrEMBL
-
Q5D0E7
-
NM_001410255.1 → NP_001397184.1 dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform g
Status: VALIDATED
- Source sequence(s)
-
AC044804, AC079956, AC122847
-
NM_001410256.1 → NP_001397185.1 dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform h
Status: VALIDATED
- Source sequence(s)
-
AC044804, AC079365, AC079956
-
NM_001410257.1 → NP_001397186.1 dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform i
Status: VALIDATED
- Source sequence(s)
-
AC044804, AC079365, AC079956
-
NM_001410258.1 → NP_001397187.1 dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform j
Status: VALIDATED
- Source sequence(s)
-
AC044804, AC079956
-
NM_011054.5 → NP_035184.1 dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform a
See identical proteins and their annotated locations for NP_035184.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) differs in the 5' UTR and uses an alternate 3' exon structure compared to variant 2. Variants 1, 7 and 9 encode the same isoform (a), which is longer and has a distinct C-terminus, compared to isoform b.
- Source sequence(s)
-
AC079274, AC079365, AC079956
- Consensus CDS
-
CCDS20170.1
- UniProtKB/TrEMBL
-
Q3USZ6
- Related
- ENSMUSP00000109966.3, ENSMUST00000114327.9
- Conserved Domains (3) summary
-
- pfam00233
Location:227 → 445
- PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
- pfam08499
Location:86 → 142
- PDEase_I_N; 3'5'-cyclic nucleotide phosphodiesterase N-terminal
- cl26511
Location:543 → 633
- Neuromodulin_N; Gap junction protein N-terminal region
RNA
-
NR_176965.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AC044804, AC079274, AC079365, AC079956
-
NR_176966.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AC044804, AC079365, AC079956
-
NR_176967.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AC044804, AC079365, AC079956
-
NR_176968.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AC079274, AC079365, AC079956
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000072.7 Reference GRCm39 C57BL/6J
- Range
-
56046783..56629590 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_006505730.5 → XP_006505793.1 dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform X1
- UniProtKB/TrEMBL
-
A0A5F8MPG4
- Related
- ENSMUSP00000158960.2, ENSMUST00000239143.2
- Conserved Domains (3) summary
-
- PTZ00121
Location:698 → 788
- PTZ00121; MAEBL; Provisional
- pfam00233
Location:382 → 610
- PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
- pfam08499
Location:241 → 297
- PDEase_I_N; 3'5'-cyclic nucleotide phosphodiesterase N-terminal
-
XM_006505734.2 → XP_006505797.1 dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform X3
- UniProtKB/TrEMBL
-
A0A0N4SWG4
- Related
- ENSMUSP00000145508.2, ENSMUST00000203372.3
- Conserved Domains (3) summary
-
- PTZ00121
Location:603 → 693
- PTZ00121; MAEBL; Provisional
- pfam00233
Location:287 → 515
- PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
- pfam08499
Location:146 → 202
- PDEase_I_N; 3'5'-cyclic nucleotide phosphodiesterase N-terminal
-
XM_006505735.3 → XP_006505798.3 dual specificity calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform X4
- UniProtKB/TrEMBL
-
Q3USZ6
- Conserved Domains (3) summary
-
- PTZ00121
Location:537 → 627
- PTZ00121; MAEBL; Provisional
- pfam00233
Location:221 → 449
- PDEase_I; 3'5'-cyclic nucleotide phosphodiesterase
- pfam08499
Location:80 → 136
- PDEase_I_N; 3'5'-cyclic nucleotide phosphodiesterase N-terminal
RNA
-
XR_003956167.1 RNA Sequence
-
XR_003956169.1 RNA Sequence
-
XR_003956168.1 RNA Sequence
-
XR_003956172.1 RNA Sequence
-
XR_003956171.2 RNA Sequence