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hmg-6 HMG box domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 185946, updated on 2-Nov-2024

Summary

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Official Symbol
hmg-6
Official Full Name
HMG box domain-containing protein
Primary source
WormBase:WBGene00009827
Locus tag
CELE_F47G4.6
See related
AllianceGenome:WB:WBGene00009827
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable DNA binding activity. Predicted to be located in nucleus. Is expressed in amphid neurons; head neurons; phasmid neurons; sperm; and tail neurons. Orthologous to human TOX4 (TOX high mobility group box family member 4). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See hmg-6 in Genome Data Viewer
Location:
chromosome: I
Exon count:
3
Sequence:
Chromosome: I; NC_003279.8 (14059312..14060890)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene PAN-3 domain-containing protein Neighboring gene ncRNA Neighboring gene Katanin_con80 domain-containing protein Neighboring gene WD_REPEATS_REGION domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003279.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
  2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
HMG box domain-containing protein
NP_493451.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    14059312..14060890
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_061050.4 → NP_493451.2  HMG box domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_493451.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9XTS5
    Conserved Domains (1) summary
    cd00084
    Location:51 → 107
    HMG-box; High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I ...
Nucleotide Protein
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