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F56D5.9 BRCT domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 186386, updated on 2-Nov-2024

Summary

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Official Symbol
F56D5.9
Official Full Name
BRCT domain-containing protein
Primary source
WormBase:WBGene00010152
Locus tag
CELE_F56D5.9
See related
AllianceGenome:WB:WBGene00010152
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be located in membrane. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See F56D5.9 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
9
Sequence:
Chromosome: IV; NC_003282.8 (9418432..9422508, complement)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene Dentin sialophosphoprotein-like;FK506-binding protein 5-like;Protein hokC Neighboring gene ncRNA Neighboring gene Coiled-coil domain-containing protein 69 Neighboring gene pseudo Neighboring gene G_PROTEIN_RECEP_F1_2 domain-containing protein Neighboring gene Daxx;SPX domain-containing protein;Uncharacterized protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003282.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
  2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
BRCT domain-containing protein
NP_501662.2
  • Partially confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    9418432..9422508 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_069261.3 → NP_501662.2  BRCT domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_501662.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q20878
    Conserved Domains (4) summary
    smart00292
    Location:938 → 996
    BRCT; breast cancer carboxy-terminal domain
    cd00204
    Location:791 → 859
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam13637
    Location:792 → 843
    Ank_4; Ankyrin repeats (many copies)
    sd00045
    Location:793 → 820
    ANK; ANK repeat [structural motif]
Nucleotide Protein
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