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F57B9.3 RNA helicase [ Caenorhabditis elegans ]

Gene ID: 186440, updated on 2-Nov-2024

Summary

Official Symbol
F57B9.3
Official Full Name
RNA helicase
Primary source
WormBase:WBGene00018997
Locus tag
CELE_F57B9.3
See related
AllianceGenome:WB:WBGene00018997
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable translation initiation factor activity. Involved in translation. Predicted to be located in P granule. Predicted to be active in cytoplasmic stress granule. Human ortholog(s) of this gene implicated in neurodevelopmental disorder with hypotonia and speech delay. Orthologous to human EIF4A2 (eukaryotic translation initiation factor 4A2). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

See F57B9.3 in Genome Data Viewer
Location:
chromosome: III
Exon count:
5
Sequence:
Chromosome: III; NC_003281.10 (6939823..6941906)

Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene Cell adhesion protein byn-1 Neighboring gene Tyrosine-protein kinase Neighboring gene 4-hydroxybenzoate polyprenyltransferase, mitochondrial Neighboring gene Activated in Blocked Unfolded protein response Neighboring gene ncRNA Neighboring gene CCR4-NOT transcription complex subunit let-711

General gene information

Markers

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 
enables helicase activity IEA
Inferred from Electronic Annotation
more info
 
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
enables translation initiation factor activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables translation initiation factor activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in PERK-mediated unfolded protein response HEP PubMed 
involved_in cytoplasmic translational initiation IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in translation IEA
Inferred from Electronic Annotation
more info
 
involved_in translation IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in translational initiation IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in P granule IEA
Inferred from Electronic Annotation
more info
 
is_active_in cytoplasmic stress granule IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
RNA helicase
NP_498514.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003281.10 Reference assembly

    Range
    6939823..6941906
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_066113.3NP_498514.2  RNA helicase [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q20935
    Conserved Domains (3) summary
    PTZ00424
    Location:19391
    PTZ00424; helicase 45; Provisional
    pfam00271
    Location:243352
    Helicase_C; Helicase conserved C-terminal domain
    cl21455
    Location:29221
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases