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nhr-195 NR LBD domain-containing protein;Nuclear receptor domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 186625, updated on 2-Nov-2024

Summary

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Official Symbol
nhr-195
Official Full Name
NR LBD domain-containing protein;Nuclear receptor domain-containing protein
Primary source
WormBase:WBGene00019115
Locus tag
CELE_F59E11.10
See related
AllianceGenome:WB:WBGene00019115
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See nhr-195 in Genome Data Viewer
Location:
chromosome: V
Exon count:
7
Sequence:
Chromosome: V; NC_003283.11 (8970693..8972371, complement)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Nuclear Hormone Receptor family Neighboring gene pseudo Neighboring gene Nuclear Hormone Receptor family Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Extensive rewiring and complex evolutionary dynamics in a C. elegans multiparameter transcription factor network. Reece-Hoyes JS, et al. Mol Cell, 2013 Jul 11. PMID 23791784, Free PMC Article
  2. Transcriptional regulation. Okkema PG, et al. WormBook, 2005 Dec 23. PMID 18050428, Free PMC Article
  3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
NR LBD domain-containing protein;Nuclear receptor domain-containing protein
NP_001256111.1
  • Confirmed by transcript evidence
NP_001370765.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    8970693..8972371 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001383363.1 → NP_001370765.1  NR LBD domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    O16752
    Conserved Domains (1) summary
    pfam00104
    Location:2 → 184
    Hormone_recep; Ligand-binding domain of nuclear hormone receptor

  2. NM_001269182.3 → NP_001256111.1  Nuclear receptor domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001256111.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    H2L098
    Conserved Domains (2) summary
    smart00399
    Location:20 → 91
    ZnF_C4; c4 zinc finger in nuclear hormone receptors
    pfam00104
    Location:174 → 376
    Hormone_recep; Ligand-binding domain of nuclear hormone receptor
Nucleotide Protein
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