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H04D03.2 DUF1330 domain-containing protein;PHD-type domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 186678, updated on 2-Nov-2024

Summary

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Official Symbol
H04D03.2
Official Full Name
DUF1330 domain-containing protein;PHD-type domain-containing protein
Primary source
WormBase:WBGene00010363
Locus tag
CELE_H04D03.2
See related
AllianceGenome:WB:WBGene00010363
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable methylated histone binding activity. Predicted to be involved in chromosome attachment to the nuclear envelope and regulation of gene expression. Predicted to be active in nuclear inner membrane. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See H04D03.2 in Genome Data Viewer
Location:
chromosome: III
Exon count:
8
Sequence:
Chromosome: III; NC_003281.10 (10439335..10442405, complement)

Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene ENhancer of Uncoordination Neighboring gene MLX-interacting protein;Ovule protein Neighboring gene ECm29 Proteasome adaptor and Scaffold Neighboring gene Uncharacterized protein Neighboring gene Protein NLRC3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003281.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables methylated histone binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables methylated histone binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in chromosome attachment to the nuclear envelope IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in chromosome attachment to the nuclear envelope IEA
Inferred from Electronic Annotation
more info
  
involved_in regulation of gene expression IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nuclear inner membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
DUF1330 domain-containing protein;PHD-type domain-containing protein
NP_499303.2
  • Confirmed by transcript evidence
NP_499304.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003281.10 Reference assembly

    Range
    10439335..10442405 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_066903.4 → NP_499304.2  PHD-type domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_499304.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    D0Z5M9
    Conserved Domains (1) summary
    PHA03377
    Location:471 → 614
    PHA03377; EBNA-3C; Provisional

  2. NM_066902.3 → NP_499303.2  DUF1330 domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_499303.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    H8ESD1
Nucleotide Protein
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