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H17B01.2 Collagen alpha-5(IV) chain [ Caenorhabditis elegans ]

Gene ID: 186749, updated on 2-Nov-2024

Summary

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Official Symbol
H17B01.2
Official Full Name
Collagen alpha-5(IV) chain
Primary source
WormBase:WBGene00000646
Locus tag
CELE_H17B01.2
See related
AllianceGenome:WB:WBGene00000646
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be part of collagen trimer. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See H17B01.2 in Genome Data Viewer
Location:
chromosome: II
Exon count:
7
Sequence:
Chromosome: II; NC_003280.10 (1470565..1472260)

Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene CC domain-containing protein Neighboring gene CLIP domain-containing serine protease Neighboring gene Neuropeptide-Like Protein Neighboring gene tRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003280.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Component Evidence Code Pubs
part_of collagen trimer IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Collagen alpha-5(IV) chain
NP_493978.2
  • Partially confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003280.10 Reference assembly

    Range
    1470565..1472260
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_061577.2 → NP_493978.2  Collagen alpha-5(IV) chain [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    O61209
    Conserved Domains (1) summary
    PRK14950
    Location:128 → 195
    PRK14950; DNA polymerase III subunits gamma and tau; Provisional
Nucleotide Protein
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