U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ulp-5 Ubiquitin-like protease family profile domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 186900, updated on 2-Nov-2024

Summary

Go to the top of the page Help
Official Symbol
ulp-5
Official Full Name
Ubiquitin-like protease family profile domain-containing protein
Primary source
WormBase:WBGene00006740
Locus tag
CELE_K02F2.4
See related
AllianceGenome:WB:WBGene00006740
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable deSUMOylase activity. Predicted to be involved in protein desumoylation. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Nov 2024]
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See ulp-5 in Genome Data Viewer
Location:
chromosome: I
Exon count:
8
Sequence:
Chromosome: I; NC_003279.8 (6812660..6814249)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene mitogen-activated protein kinase kinase Neighboring gene Conserved secreted protein Neighboring gene ncRNA Neighboring gene Splicing factor 3B subunit 3 Neighboring gene G-protein coupled receptors family 1 profile domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003279.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Erratum: Dynamic SUMO modification regulates mitotic chromosome assembly and cell cycle progression in Caenorhabditis elegans. Pelisch F, et al. Nat Commun, 2015 Feb 12. PMID 25672768, Free PMC Article
  2. Dynamic SUMO modification regulates mitotic chromosome assembly and cell cycle progression in Caenorhabditis elegans. Pelisch F, et al. Nat Commun, 2014 Dec 5. PMID 25475837, Free PMC Article
  3. A genome-wide RNAi screen identifies factors required for distinct stages of C. elegans piRNA biogenesis. Goh WS, et al. Genes Dev, 2014 Apr 1. PMID 24696458, Free PMC Article
  4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. ulp-5 is required for the biogenesis of 21U-RNAs and is likely involved in the transcription of capped pre-21U precursor RNAs.
    Title: A genome-wide RNAi screen identifies factors required for distinct stages of C. elegans piRNA biogenesis.
Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables cysteine-type peptidase activity IEA
Inferred from Electronic Annotation
more info
  
enables deSUMOylase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in protein desumoylation IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

Go to the top of the page Help
Preferred Names
Ubiquitin-like protease family profile domain-containing protein
NP_491952.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    6812660..6814249
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_059551.3 → NP_491952.1  Ubiquitin-like protease family profile domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_491952.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    O44984
    Conserved Domains (1) summary
    pfam02902
    Location:50 → 302
    Peptidase_C48; Ulp1 protease family, C-terminal catalytic domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.