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ncs-3 EF-hand domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 186953, updated on 2-Nov-2024

Summary

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Official Symbol
ncs-3
Official Full Name
EF-hand domain-containing protein
Primary source
WormBase:WBGene00003565
Locus tag
CELE_K03E6.3
See related
AllianceGenome:WB:WBGene00003565
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable calcium ion binding activity. Predicted to be involved in regulation of signal transduction. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See ncs-3 in Genome Data Viewer
Location:
chromosome: X
Exon count:
6
Sequence:
Chromosome: X; NC_003284.9 (1054081..1056846)

Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene Vesicle-trafficking protein SEC22b Neighboring gene Ovule protein Neighboring gene MFS domain-containing protein;Major facilitator superfamily (MFS) profile domain-containing protein Neighboring gene Band 7 domain-containing protein;Protein unc-1 Neighboring gene B9 domain-containing protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003284.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The sequence and associated null phenotype of a C. elegans neurocalcin-like gene. Rajaram S, et al. Genesis, 2000 Apr. PMID 10748460
  2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables calcium ion binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of signal transduction IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
EF-hand domain-containing protein
NP_508201.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003284.9 Reference assembly

    Range
    1054081..1056846
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_075800.6 → NP_508201.2  EF-hand domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_508201.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q95ZR9
    Conserved Domains (2) summary
    COG5126
    Location:19 → 187
    FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]
    cd00051
    Location:77 → 135
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
Nucleotide Protein
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