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ttr-3 Transthyretin-like protein 3 [ Caenorhabditis elegans ]

Gene ID: 186957, updated on 2-Nov-2024

Summary

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Official Symbol
ttr-3
Official Full Name
Transthyretin-like protein 3
Primary source
WormBase:WBGene00010538
Locus tag
CELE_K03H1.3
See related
AllianceGenome:WB:WBGene00010538
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be located in cell surface and extracellular region. Is expressed in hypodermis and ventral cord blast cell. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See ttr-3 in Genome Data Viewer
Location:
chromosome: III
Exon count:
5
Sequence:
Chromosome: III; NC_003281.10 (9925530..9926750, complement)

Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene histone acetyltransferase Neighboring gene Transthyretin-like protein 2 Neighboring gene Transthyretin-like protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003281.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Analysis of protein domain families in Caenorhabditis elegans. Sonnhammer EL, et al. Genomics, 1997 Dec 1. PMID 9417907
  2. Characterization of the intracellular neurexin interactome by in vivo proximity ligation suggests its involvement in presynaptic actin assembly. Schaan Profes M, et al. PLoS Biol, 2024 Jan. PMID 38252619, Free PMC Article
  3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
  
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Transthyretin-like protein 3
NP_499202.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003281.10 Reference assembly

    Range
    9925530..9926750 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_066801.4 → NP_499202.1  Transthyretin-like protein 3 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_499202.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P34499
    Conserved Domains (1) summary
    pfam01060
    Location:30 → 114
    TTR-52; Transthyretin-like family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P34499.1

Gene LinkOut

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