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K08D8.4 CUB domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 187144, updated on 2-Nov-2024

Summary

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Official Symbol
K08D8.4
Official Full Name
CUB domain-containing protein
Primary source
WormBase:WBGene00010658
Locus tag
CELE_K08D8.4
See related
AllianceGenome:WB:WBGene00010658
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Involved in innate immune response. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See K08D8.4 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
9
Sequence:
Chromosome: IV; NC_003282.8 (12907469..12909998, complement)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene Membrane protein UL56 Neighboring gene CUB-like domain-containing protein Neighboring gene CUB-like domain-containing protein Neighboring gene CUB-like domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003282.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A conserved role for a GATA transcription factor in regulating epithelial innate immune responses. Shapira M, et al. Proc Natl Acad Sci U S A, 2006 Sep 19. PMID 16968778, Free PMC Article
  2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Process Evidence Code Pubs
involved_in innate immune response HEP PubMed 

General protein information

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Preferred Names
CUB domain-containing protein
NP_001023284.1
  • Confirmed by transcript evidence
NP_001023285.1
  • Confirmed by transcript evidence
NP_001023287.1
  • Confirmed by transcript evidence
NP_001367118.1
  • Partially confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    12907469..12909998 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001028113.4 → NP_001023284.1  CUB domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001023284.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q21330
    Conserved Domains (2) summary
    pfam02408
    Location:17 → 134
    CUB_2; CUB-like domain
    pfam07010
    Location:463 → 544
    Endomucin

  2. NM_001028116.4 → NP_001023287.1  CUB domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001023287.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q5CZ40
    Conserved Domains (1) summary
    pfam02408
    Location:17 → 134
    CUB_2; CUB-like domain

  3. NM_001028114.6 → NP_001023285.1  CUB domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001023285.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q5CZ42
    Conserved Domains (2) summary
    pfam02408
    Location:17 → 134
    CUB_2; CUB-like domain
    pfam07010
    Location:355 → 436
    Endomucin

  4. NM_001380495.1 → NP_001367118.1  CUB domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q5CZ41
    Conserved Domains (1) summary
    pfam02408
    Location:17 → 134
    CUB_2; CUB-like domain

RNA

  1. NR_131629.1 RNA Sequence

    Status: REVIEWED

  2. NR_131628.1 RNA Sequence

    Status: REVIEWED

Nucleotide Protein
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