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K09F6.7 RING-type domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 187234, updated on 2-Nov-2024

Summary

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Official Symbol
K09F6.7
Official Full Name
RING-type domain-containing protein
Primary source
WormBase:WBGene00019590
Locus tag
CELE_K09F6.7
See related
AllianceGenome:WB:WBGene00019590
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable metal ion binding activity. Orthologous to human TRIM13 (tripartite motif containing 13) and TRIM59 (tripartite motif containing 59). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See K09F6.7 in Genome Data Viewer
Location:
chromosome: II
Exon count:
6
Sequence:
Chromosome: II; NC_003280.10 (2290917..2292127, complement)

Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene DNA-directed DNA polymerase Neighboring gene Nuclear receptor domain-containing protein Neighboring gene F-box C protein Neighboring gene Cilia- and flagella-associated protein 299

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003280.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
  2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
RING-type domain-containing protein
NP_494227.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003280.10 Reference assembly

    Range
    2290917..2292127 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_061826.4 → NP_494227.1  RING-type domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_494227.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    O16734
    Conserved Domains (3) summary
    COG5432
    Location:2 → 114
    RAD18; RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
    cd00162
    Location:6 → 50
    RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
    cl17238
    Location:5 → 51
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
Nucleotide Protein
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