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sru-40 Serpentine Receptor, class U;Serpentine receptor class gamma [ Caenorhabditis elegans ]

Gene ID: 187650, updated on 2-Nov-2024

Summary

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Official Symbol
sru-40
Official Full Name
Serpentine Receptor, class U;Serpentine receptor class gamma
Primary source
WormBase:WBGene00005703
Locus tag
CELE_R07B5.3
See related
AllianceGenome:WB:WBGene00005703
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be located in membrane. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See sru-40 in Genome Data Viewer
Location:
chromosome: V
Exon count:
5
Sequence:
Chromosome: V; NC_003283.11 (9832646..9834000, complement)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene pseudo Neighboring gene Serpentine Receptor, class T Neighboring gene G-protein coupled receptors family 1 profile domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The CHARGE syndrome ortholog CHD-7 regulates TGF-β pathways in Caenorhabditis elegans. Jofré DM, et al. Proc Natl Acad Sci U S A, 2022 Apr 12. PMID 35394881, Free PMC Article
  2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Serpentine Receptor, class U;Serpentine receptor class gamma
NP_001256139.1
  • Partially confirmed by transcript evidence
NP_001256140.1
  • Confirmed by transcript evidence
NP_001256141.1
  • Confirmed by transcript evidence
NP_001256142.1
  • Product from WormBase gene class sru;
    Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    9832646..9834000 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001269210.2 → NP_001256139.1  Serpentine Receptor, class U [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001256139.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q21784
    Conserved Domains (1) summary
    pfam10322
    Location:10 → 311
    7TM_GPCR_Sru; Serpentine type 7TM GPCR chemoreceptor Sru

  2. NM_001269211.4 → NP_001256140.1  Serpentine receptor class gamma [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001256140.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F5GUB4
    Conserved Domains (1) summary
    pfam10322
    Location:9 → 116
    7TM_GPCR_Sru; Serpentine type 7TM GPCR chemoreceptor Sru

  3. NM_001269212.3 → NP_001256141.1  Serpentine receptor class gamma [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001256141.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F5GUB5
    Conserved Domains (1) summary
    pfam10322
    Location:1 → 98
    7TM_GPCR_Sru; Serpentine type 7TM GPCR chemoreceptor Sru

  4. NM_001269213.3 → NP_001256142.1  Serpentine Receptor, class U [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001256142.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F5GUB6
    Conserved Domains (1) summary
    pfam10322
    Location:1 → 42
    7TM_GPCR_Sru; Serpentine type 7TM GPCR chemoreceptor Sru
Nucleotide Protein
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