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sru-38 Serpentine Receptor, class T [ Caenorhabditis elegans ]

Gene ID: 187651, updated on 2-Nov-2024

Summary

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Official Symbol
sru-38
Official Full Name
Serpentine Receptor, class T
Primary source
WormBase:WBGene00005701
Locus tag
CELE_R07B5.4
See related
AllianceGenome:WB:WBGene00005701
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Located in several cellular components, including dendrite; neuronal cell body; and non-motile cilium. Is expressed in intestine and nervous system. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See sru-38 in Genome Data Viewer
Location:
chromosome: V
Exon count:
4
Sequence:
Chromosome: V; NC_003283.11 (9834463..9836045, complement)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene Serpentine Receptor, class U;Serpentine receptor class gamma Neighboring gene G-protein coupled receptors family 1 profile domain-containing protein Neighboring gene Serpentine Receptor, class U

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The putative chemoreceptor families of C. elegans. Robertson HM, et al. WormBook, 2006 Jan 6. PMID 18050473, Free PMC Article
  2. Elipsa is an early determinant of ciliogenesis that links the IFT particle to membrane-associated small GTPase Rab8. Omori Y, et al. Nat Cell Biol, 2008 Apr. PMID 18364699
  3. KIN-29 SIK regulates chemoreceptor gene expression via an MEF2 transcription factor and a class II HDAC. van der Linden AM, et al. EMBO J, 2007 Jan 24. PMID 17170704, Free PMC Article
  4. Diverse cell type-specific mechanisms localize G protein-coupled receptors to Caenorhabditis elegans sensory cilia. Brear AG, et al. Genetics, 2014 Jun. PMID 24646679, Free PMC Article
  5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Component Evidence Code Pubs
located_in axon IDA
Inferred from Direct Assay
more info
 PubMed 
located_in dendrite IDA
Inferred from Direct Assay
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in neuronal cell body IDA
Inferred from Direct Assay
more info
 PubMed 
located_in non-motile cilium IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
Serpentine Receptor, class T
NP_505538.1
  • Partially confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    9834463..9836045 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_073137.3 → NP_505538.1  Serpentine Receptor, class T [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_505538.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q21785
    Conserved Domains (1) summary
    pfam10322
    Location:9 → 310
    7TM_GPCR_Sru; Serpentine type 7TM GPCR chemoreceptor Sru
Nucleotide Protein
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