R08D7.7 putative sugar kinase R08D7.7 [Caenorhabditis elegans] - Gene

Summary

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Official Symbol: R08D7.7
Official Full Name: putative sugar kinase R08D7.7
Primary source: WormBase:WBGene00011147
Locus tag: CELE_R08D7.7
See related: AllianceGenome:WB:WBGene00011147
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Caenorhabditis elegans (strain: Bristol N2)
Lineage: Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary: Predicted to enable D-xylulokinase activity. Predicted to be involved in xylulose metabolic process. Predicted to be active in cytosol. Orthologous to human XYLB (xylulokinase). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See R08D7.7 in Genome Data Viewer

Location:: chromosome: III

Exon count:: 11

Sequence:: Chromosome: III; NC_003281.10 (8992205..8994746)

Chromosome III - NC_003281.10 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003281.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

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Pathways from PubChem

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

R08D7.7 (e-PCR)
- UniSTS:307858

Homology

Orthologs from OrthoDB

Gene Ontology Provided by WormBase

Function	Evidence Code	Pubs
enables D-xylulokinase activity	IBA Inferred from Biological aspect of Ancestor more info
enables kinase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in carbohydrate metabolic process	IEA Inferred from Electronic Annotation more info
involved_in carbohydrate phosphorylation	IEA Inferred from Electronic Annotation more info
involved_in xylulose metabolic process	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in cytosol	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: putative sugar kinase R08D7.7

NP_498988.2

Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003281.10 Reference assembly

Range

8992205..8994746

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_066587.6 → NP_498988.2 putative sugar kinase R08D7.7 [Caenorhabditis elegans]

See identical proteins and their annotated locations for NP_498988.2

Status: REVIEWED

UniProtKB/Swiss-Prot

P30646

Conserved Domains (2) summary

cd07776
Location:5 → 473

FGGY_D-XK_euk; eukaryotic D-xylulose kinases; a subfamily of the FGGY family of carbohydrate kinases

COG1070
Location:1 → 515

XylB; Sugar (pentulose or hexulose) kinase [Carbohydrate transport and metabolism]