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R08F11.7 Peroxidase [ Caenorhabditis elegans ]

Gene ID: 187708, updated on 2-Nov-2024

Summary

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Official Symbol
R08F11.7
Official Full Name
Peroxidase
Primary source
WormBase:WBGene00019970
Locus tag
CELE_R08F11.7
See related
AllianceGenome:WB:WBGene00019970
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable peroxidase activity. Involved in defense response to Gram-positive bacterium. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See R08F11.7 in Genome Data Viewer
Location:
chromosome: V
Exon count:
4
Sequence:
Chromosome: V; NC_003283.11 (3790070..3793748)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Methyltransferase domain-containing protein Neighboring gene Cysteine synthase 3 Neighboring gene Glycosyl-hydrolase family 116 catalytic region domain-containing protein;Non-lysosomal glucosylceramidase Neighboring gene pseudo Neighboring gene Serpentine Receptor, class T Neighboring gene CYtochrome P450 family

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The SKPO-1 peroxidase functions in the hypodermis to protect Caenorhabditis elegans from bacterial infection. Tiller GR, et al. Genetics, 2014 Jun. PMID 24621828, Free PMC Article
  2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables heme binding IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables peroxidase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables peroxidase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in cellular oxidant detoxification IEA
Inferred from Electronic Annotation
more info
  
involved_in defense response to Gram-positive bacterium IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in response to oxidative stress IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Peroxidase
NP_504048.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    3790070..3793748
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_071647.5 → NP_504048.1  Peroxidase [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_504048.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    O01892
    Conserved Domains (2) summary
    cd09823
    Location:359 → 740
    peroxinectin_like; peroxinectin_like animal heme peroxidases
    pfam03098
    Location:207 → 745
    An_peroxidase; Animal haem peroxidase
Nucleotide Protein
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