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T05C3.2 NACHT domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 188117, updated on 2-Nov-2024

Summary

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Official Symbol
T05C3.2
Official Full Name
NACHT domain-containing protein
Primary source
WormBase:WBGene00020254
Locus tag
CELE_T05C3.2
See related
AllianceGenome:WB:WBGene00020254
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Orthologous to human NWD2 (NACHT and WD repeat domain containing 2). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See T05C3.2 in Genome Data Viewer
Location:
chromosome: V
Exon count:
26
Sequence:
Chromosome: V; NC_003283.11 (5493747..5503010)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Ground-like domain-containing protein Neighboring gene Carb-bd_dom_fam9 domain-containing protein;PLD phosphodiesterase domain-containing protein Neighboring gene DNaJ domain (prokaryotic heat shock protein) Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
  2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

General protein information

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Preferred Names
NACHT domain-containing protein
NP_504451.3
  • Partially confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    5493747..5503010
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_072050.3 → NP_504451.3  NACHT domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_504451.3

    Status: REVIEWED

    UniProtKB/TrEMBL
    O16302
    Conserved Domains (6) summary
    smart00382
    Location:459 → 574
    AAA; ATPases associated with a variety of cellular activities
    COG2319
    Location:1303 → 1712
    WD40; WD40 repeat [General function prediction only]
    pfam05729
    Location:459 → 633
    NACHT; NACHT domain
    pfam13271
    Location:115 → 201
    DUF4062; Domain of unknown function (DUF4062)
    sd00039
    Location:1296 → 1332
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:1326 → 1712
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
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