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col-55 Collagen triple helix repeat protein [ Caenorhabditis elegans ]

Gene ID: 188127, updated on 2-Nov-2024

Summary

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Official Symbol
col-55
Official Full Name
Collagen triple helix repeat protein
Primary source
WormBase:WBGene00000632
Locus tag
CELE_T05E7.2
See related
AllianceGenome:WB:WBGene00000632
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be part of collagen trimer. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See col-55 in Genome Data Viewer
Location:
chromosome: I
Exon count:
2
Sequence:
Chromosome: I; NC_003279.8 (6199673..6200193)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene WASH complex subunit strumpellin Neighboring gene DUF7027 domain-containing protein Neighboring gene ncRNA Neighboring gene Very Early Transcript Neighboring gene BAAT_C domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003279.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The in-silico characterization of the Caenorhabditis elegans matrisome and proposal of a novel collagen classification. Teuscher AC, et al. Matrix Biol Plus, 2019 Feb. PMID 33543001, Free PMC Article
  2. Analysis of long-lived C. elegans daf-2 mutants using serial analysis of gene expression. Halaschek-Wiener J, et al. Genome Res, 2005 May. PMID 15837805, Free PMC Article
  3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Gene Ontology Provided by WormBase

Component Evidence Code Pubs
part_of collagen trimer IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Collagen triple helix repeat protein
NP_491786.2
  • Predicted

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    6199673..6200193
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_059385.2 → NP_491786.2  Collagen triple helix repeat protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    O01860
Nucleotide Protein
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