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fbxa-196 F-box domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 188148, updated on 18-Sep-2024

Summary

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Official Symbol
fbxa-196
Official Full Name
F-box domain-containing protein
Primary source
WormBase:WBGene00020265
Locus tag
CELE_T05H4.2
See related
AllianceGenome:WB:WBGene00020265
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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Genomic context

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See fbxa-196 in Genome Data Viewer
Location:
chromosome: V
Exon count:
5
Sequence:
Chromosome: V; NC_003283.11 (6448656..6450217)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene F-box associated domain-containing protein;FBA_2 domain-containing protein Neighboring gene U2A'/phosphoprotein 32 family A C-terminal domain-containing protein Neighboring gene Phospholipid/glycerol acyltransferase domain-containing protein Neighboring gene Phospholipid/glycerol acyltransferase domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multiple Skp1-related proteins in Caenorhabditis elegans: diverse patterns of interaction with Cullins and F-box proteins. Yamanaka A, et al. Curr Biol, 2002 Feb 19. PMID 11864566
  2. The F-box protein family. Kipreos ET, et al. Genome Biol, 2000. PMID 11178263, Free PMC Article
  3. A protein domain-based interactome network for C. elegans early embryogenesis. Boxem M, et al. Cell, 2008 Aug 8. PMID 18692475, Free PMC Article
  4. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Simonis N, et al. Nat Methods, 2009 Jan. PMID 19123269, Free PMC Article
  5. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 

General protein information

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Preferred Names
F-box domain-containing protein
NP_504642.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    6448656..6450217
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_072241.4 → NP_504642.1  F-box domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_504642.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    O16525
    Conserved Domains (3) summary
    smart00256
    Location:112 → 145
    FBOX; A Receptor for Ubiquitination Targets
    pfam01827
    Location:225 → 365
    FTH; FTH domain
    pfam17906
    Location:36 → 84
    HTH_48; HTH domain in Mos1 transposase
Nucleotide Protein
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