nhr-213 Nuclear Hormone Receptor family;Nuclear hormone receptor family member nhr-213 [Caenorhabditis elegans] - Gene

Summary

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Official Symbol: nhr-213
Official Full Name: Nuclear Hormone Receptor family;Nuclear hormone receptor family member nhr-213
Primary source: WormBase:WBGene00011520
Locus tag: CELE_T06C12.13
See related: AllianceGenome:WB:WBGene00011520
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Caenorhabditis elegans (strain: Bristol N2)
Lineage: Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary: Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Is expressed in several structures, including excretory system; intestine; pharynx; somatic nervous system; and vulva. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See nhr-213 in Genome Data Viewer

Location:: chromosome: V

Exon count:: 8

Sequence:: Chromosome: V; NC_003283.11 (15894439..15896771, complement)

Chromosome V - NC_003283.11 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

T06C12.13 (e-PCR)
- UniSTS:314908

Homology

Orthologs from OrthoDB

Gene Ontology Provided by WormBase

Function	Evidence Code	Pubs
enables DNA binding	IEA Inferred from Electronic Annotation more info
enables DNA-binding transcription factor activity	IEA Inferred from Electronic Annotation more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info
enables sequence-specific DNA binding	IEA Inferred from Electronic Annotation more info
enables zinc ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in regulation of DNA-templated transcription	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: Nuclear Hormone Receptor family;Nuclear hormone receptor family member nhr-213

NP_001263903.1

Confirmed by transcript evidence

NP_506974.1

Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003283.11 Reference assembly

Range

15894439..15896771 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001276974.4 → NP_001263903.1 Nuclear Hormone Receptor family [Caenorhabditis elegans]

Status: REVIEWED

UniProtKB/TrEMBL

L8E924

Conserved Domains (2) summary

smart00399
Location:23 → 95

ZnF_C4; c4 zinc finger in nuclear hormone receptors

pfam00104
Location:189 → 386

Hormone_recep; Ligand-binding domain of nuclear hormone receptor
NM_074573.2 → NP_506974.1 Nuclear hormone receptor family member nhr-213 [Caenorhabditis elegans]

Status: REVIEWED

UniProtKB/Swiss-Prot

O18048

Conserved Domains (2) summary

smart00399
Location:23 → 95

ZnF_C4; c4 zinc finger in nuclear hormone receptors

pfam00104
Location:189 → 391

Hormone_recep; Ligand-binding domain of nuclear hormone receptor