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col-56 Col_cuticle_N domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 188271, updated on 2-Nov-2024

Summary

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Official Symbol
col-56
Official Full Name
Col_cuticle_N domain-containing protein
Primary source
WormBase:WBGene00000633
Locus tag
CELE_T08B2.2
See related
AllianceGenome:WB:WBGene00000633
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be located in membrane. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See col-56 in Genome Data Viewer
Location:
chromosome: I
Exon count:
5
Sequence:
Chromosome: I; NC_003279.8 (6232777..6234280)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene PINc domain-containing protein Neighboring gene MS Related Protein Neighboring gene MS Related Protein Neighboring gene Chondroitin sulfate proteoglycan 4 Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003279.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Increasing Complexity of the N-Glycome During Caenorhabditis Development. Wilson IBH, et al. Mol Cell Proteomics, 2023 Mar. PMID 36717059, Free PMC Article
  2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Col_cuticle_N domain-containing protein
NP_491800.1
  • Partially confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    6232777..6234280
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_059399.1 → NP_491800.1  Col_cuticle_N domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_491800.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9GYS2
    Conserved Domains (1) summary
    pfam01391
    Location:210 → 266
    Collagen; Collagen triple helix repeat (20 copies)
Nucleotide Protein
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