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srr-1 Serpentine Receptor, class R [ Caenorhabditis elegans ]

Gene ID: 189285, updated on 2-Nov-2024

Summary

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Official Symbol
srr-1
Official Full Name
Serpentine Receptor, class R
Primary source
WormBase:WBGene00005652
Locus tag
CELE_W07G4.6
See related
AllianceGenome:WB:WBGene00005652
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be located in membrane. Is expressed in neuronal sheath cell; pharynx; and ray. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See srr-1 in Genome Data Viewer
Location:
chromosome: V
Exon count:
8
Sequence:
Chromosome: V; NC_003283.11 (13049730..13053735, complement)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Putative aminopeptidase W07G4.4 Neighboring gene RILP-like protein 1 Neighboring gene TonB-dependent receptor Neighboring gene ncRNA Neighboring gene Secreted protein Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Serpentine Receptor, class R
NP_001299999.1
  • Product from WormBase gene class srr;
    Confirmed by transcript evidence
NP_001364593.1
  • Confirmed by transcript evidence;
    Product from WormBase gene class srr

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    13049730..13053735 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001377607.2 → NP_001364593.1  Serpentine Receptor, class R [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    G5EG25
    Conserved Domains (1) summary
    pfam03268
    Location:32 → 391
    DUF267; Caenorhabditis protein of unknown function, DUF267

  2. NM_001313070.5 → NP_001299999.1  Serpentine Receptor, class R [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A0K3AXG8
    Conserved Domains (1) summary
    pfam03268
    Location:38 → 397
    DUF267; Caenorhabditis protein of unknown function, DUF267
Nucleotide Protein
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