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svh-11 Putative galactoside 2-alpha-L-fucosyltransferase svh-11 [ Caenorhabditis elegans ]

Gene ID: 189361, updated on 2-Nov-2024

Summary

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Official Symbol
svh-11
Official Full Name
Putative galactoside 2-alpha-L-fucosyltransferase svh-11
Primary source
WormBase:WBGene00021164
Locus tag
CELE_Y5H2B.1
See related
AllianceGenome:WB:WBGene00021164
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable galactoside 2-alpha-L-fucosyltransferase activity. Involved in positive regulation of axon regeneration. Predicted to be located in Golgi cisterna membrane. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See svh-11 in Genome Data Viewer
Location:
chromosome: V
Exon count:
9
Sequence:
Chromosome: V; NC_003283.11 (2207101..2210272)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene CYtochrome P450 family Neighboring gene ncRNA Neighboring gene Serpentine Receptor, class T Neighboring gene Nuclear hormone receptor family member nhr-133 Neighboring gene Nuclear Hormone Receptor family

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. N-Glycosylation of the Discoidin Domain Receptor Is Required for Axon Regeneration in Caenorhabditis elegans. Shimizu T, et al. Genetics, 2019 Oct. PMID 31371405, Free PMC Article
  2. Carbohydrates and glycosylation. Berninsone PM. WormBook, 2006 Dec 18. PMID 18050430, Free PMC Article
  3. Increasing Complexity of the N-Glycome During Caenorhabditis Development. Wilson IBH, et al. Mol Cell Proteomics, 2023 Mar. PMID 36717059, Free PMC Article
  4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables galactoside 2-alpha-L-fucosyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
  
involved_in macromolecule glycosylation IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in positive regulation of axon regeneration IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
  
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Putative galactoside 2-alpha-L-fucosyltransferase svh-11
NP_001303775.1
  • Confirmed by transcript evidence
NP_503601.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    2207101..2210272
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_071200.2 → NP_503601.1  Putative galactoside 2-alpha-L-fucosyltransferase svh-11 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_503601.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0A0M7RER3, Q966A0
    Conserved Domains (1) summary
    cd11301
    Location:64 → 322
    Fut1_Fut2_like; Alpha-1,2-fucosyltransferase

  2. NM_001316846.1 → NP_001303775.1  Putative galactoside 2-alpha-L-fucosyltransferase svh-11 [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A0M7RER3
    Conserved Domains (1) summary
    cd11301
    Location:64 → 301
    Fut1_Fut2_like; Alpha-1,2-fucosyltransferase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q966A0.1

Gene LinkOut

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