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glb-29 Globin domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 189454, updated on 2-Nov-2024

Summary

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Official Symbol
glb-29
Official Full Name
Globin domain-containing protein
Primary source
WormBase:WBGene00012461
Locus tag
CELE_Y17G7B.6
See related
AllianceGenome:WB:WBGene00012461
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable oxygen binding activity and oxygen carrier activity. Predicted to be involved in oxygen transport and response to hypoxia. Is expressed in head neurons; lateral nerve cord; tail neurons; ventral cord neurons; and ventral nerve cord. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See glb-29 in Genome Data Viewer
Location:
chromosome: II
Exon count:
11
Sequence:
Chromosome: II; NC_003280.10 (12009072..12023832)

Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene Deoxyhypusine synthase Neighboring gene Activin_recp domain-containing protein;DUF281 domain-containing protein Neighboring gene DNA replication licensing factor MCM2 Neighboring gene ncRNA Neighboring gene RNA exonuclease 4 Neighboring gene F-box domain-containing protein Neighboring gene Spliceosome-associated protein CWC27 homolog

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003280.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Caenorhabditis globin gene family reveals extensive nematode-specific radiation and diversification. Hoogewijs D, et al. BMC Evol Biol, 2008 Oct 9. PMID 18844991, Free PMC Article
  2. Wide diversity in structure and expression profiles among members of the Caenorhabditis elegans globin protein family. Hoogewijs D, et al. BMC Genomics, 2007 Oct 4. PMID 17916248, Free PMC Article
  3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables heme binding IEA
Inferred from Electronic Annotation
more info
  
enables oxygen binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables oxygen binding IEA
Inferred from Electronic Annotation
more info
  
enables oxygen carrier activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables oxygen carrier activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in oxygen transport IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in oxygen transport IEA
Inferred from Electronic Annotation
more info
  
involved_in response to hypoxia IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
Globin domain-containing protein
NP_001254331.1
  • Confirmed by transcript evidence
NP_001254332.1
  • Confirmed by transcript evidence
NP_001254333.1
  • Confirmed by transcript evidence
NP_001254334.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003280.10 Reference assembly

    Range
    12009072..12023832
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001267402.3 → NP_001254331.1  Globin domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001254331.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    E1NZ07
    Conserved Domains (1) summary
    cd01040
    Location:198 → 341
    Mb_like; myoglobin_like; M family globin domain

  2. NM_001267403.4 → NP_001254332.1  Globin domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001254332.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    E1NZ08
    Conserved Domains (1) summary
    cd01040
    Location:131 → 274
    Mb_like; myoglobin_like; M family globin domain

  3. NM_001267404.5 → NP_001254333.1  Globin domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001254333.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    E1NZ09
    Conserved Domains (1) summary
    cd01040
    Location:61 → 204
    Mb_like; myoglobin_like; M family globin domain

  4. NM_001267405.2 → NP_001254334.1  Globin domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001254334.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9XXI2
    Conserved Domains (1) summary
    cd01040
    Location:46 → 189
    Mb_like; myoglobin_like; M family globin domain
Nucleotide Protein
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