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spe-47 Major sperm protein [ Caenorhabditis elegans ]

Gene ID: 189522, updated on 2-Nov-2024

Summary

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Official Symbol
spe-47
Official Full Name
Major sperm protein
Primary source
WormBase:WBGene00021271
Locus tag
CELE_Y23H5A.4
See related
AllianceGenome:WB:WBGene00021271
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be located in cytoplasm; cytoskeleton; and pseudopodium. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See spe-47 in Genome Data Viewer
Location:
chromosome: I
Exon count:
6
Sequence:
Chromosome: I; NC_003279.8 (2617529..2620430)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Alpha-catulin Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Protein pid-3 Neighboring gene Cnn_1N domain-containing protein;t-SNARE coiled-coil homology domain-containing protein Neighboring gene Cysteine--tRNA ligase, cytoplasmic

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003279.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functionally non-redundant paralogs spe-47 and spe-50 encode FB-MO associated proteins and interact with him-8. Clark JN, et al. PLoS One, 2020. PMID 33382704, Free PMC Article
  2. A New Player in the Spermiogenesis Pathway of Caenorhabditis elegans. LaMunyon CW, et al. Genetics, 2015 Nov. PMID 26333688, Free PMC Article
  3. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Simonis N, et al. Nat Methods, 2009 Jan. PMID 19123269, Free PMC Article
  4. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article
  5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Functionally non-redundant paralogs spe-47 and spe-50 encode FB-MO associated proteins and interact with him-8.
    Title: Functionally non-redundant paralogs spe-47 and spe-50 encode FB-MO associated proteins and interact with him-8.
  2. identification of the spe-47 gene from the hc198 mutation that causes premature spermiogenesis
    Title: A New Player in the Spermiogenesis Pathway of Caenorhabditis elegans.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in cell projection IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
  
located_in pseudopodium IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Major sperm protein
NP_001293287.1
  • Confirmed by transcript evidence
NP_491010.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    2617529..2620430
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_058609.3 → NP_491010.1  Major sperm protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_491010.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    O76615
    Conserved Domains (2) summary
    pfam00635
    Location:264 → 369
    Motile_Sperm; MSP (Major sperm protein) domain
    pfam03134
    Location:78 → 142
    TB2_DP1_HVA22; TB2/DP1, HVA22 family

  2. NM_001306358.3 → NP_001293287.1  Major sperm protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001293287.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A061AKN6
Nucleotide Protein
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