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srt-47 Serpentine Receptor, class T [ Caenorhabditis elegans ]

Gene ID: 189832, updated on 2-Nov-2024

Summary

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Official Symbol
srt-47
Official Full Name
Serpentine Receptor, class T
Primary source
WormBase:WBGene00012770
Locus tag
CELE_Y41E3.12
See related
AllianceGenome:WB:WBGene00012770
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be located in membrane. Is expressed in AWC-OFF and head neurons. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See srt-47 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
5
Sequence:
Chromosome: IV; NC_003282.8 (15049380..15053371, complement)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene putative elongation factor 1-beta/1-delta 2 Neighboring gene ncRNA Neighboring gene B30.2/SPRY domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003282.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. C30F12.4 influences oogenesis, fat metabolism, and lifespan in C. elegans. Wang L, et al. Protein Cell, 2016 Oct. PMID 27638466, Free PMC Article
  2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Serpentine Receptor, class T
NP_502819.2
  • Partially confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    15049380..15053371 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_070418.3 → NP_502819.2  Serpentine Receptor, class T [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_502819.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9U2H7
    Conserved Domains (1) summary
    pfam10321
    Location:3 → 311
    7TM_GPCR_Srt; Serpentine type 7TM GPCR chemoreceptor Srt
Nucleotide Protein
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