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Y47G6A.14 RING-type domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 189994, updated on 2-Nov-2024

Summary

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Official Symbol
Y47G6A.14
Official Full Name
RING-type domain-containing protein
Primary source
WormBase:WBGene00021640
Locus tag
CELE_Y47G6A.14
See related
AllianceGenome:WB:WBGene00021640
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable metal ion binding activity. Predicted to be involved in innate immune response. Orthologous to human TRIM55 (tripartite motif containing 55). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See Y47G6A.14 in Genome Data Viewer
Location:
chromosome: I
Exon count:
13
Sequence:
Chromosome: I; NC_003279.8 (3462270..3466304, complement)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene non-specific serine/threonine protein kinase Neighboring gene Protein kinase domain-containing protein Neighboring gene DNA mismatch repair protein Neighboring gene AFG3-like protein spg-7 Neighboring gene ncRNA Neighboring gene DUF148 domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003279.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A genome-wide study of PDZ-domain interactions in C. elegans reveals a high frequency of non-canonical binding. Lenfant N, et al. BMC Genomics, 2010 Nov 26. PMID 21110867, Free PMC Article
  2. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Simonis N, et al. Nat Methods, 2009 Jan. PMID 19123269, Free PMC Article
  3. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article
  4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in innate immune response IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
RING-type domain-containing protein
NP_491164.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    3462270..3466304 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_058763.10 → NP_491164.2  RING-type domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_491164.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9N3T6
    Conserved Domains (2) summary
    cd00162
    Location:10 → 59
    RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
    cl17238
    Location:9 → 60
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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