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gcn-1 TOG domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 190051, updated on 2-Nov-2024

Summary

Official Symbol
gcn-1
Official Full Name
TOG domain-containing protein
Primary source
WormBase:WBGene00021697
Locus tag
CELE_Y48G9A.3
See related
AllianceGenome:WB:WBGene00021697
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable protein kinase regulator activity. Involved in positive regulation of peptidyl-serine phosphorylation; regulation of apoptotic process; and regulation of translation. Acts upstream of with a positive effect on positive regulation of gene expression. Acts upstream of or within with a negative effect on negative regulation of translation. Predicted to be located in cytosolic ribosome. Predicted to be active in cytosol. Is expressed in several structures, including body wall musculature; head neurons; hermaphrodite gonad; intestinal cell; and pharyngeal neurons. Orthologous to human GCN1 (GCN1 activator of EIF2AK4). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

See gcn-1 in Genome Data Viewer
Location:
chromosome: III
Exon count:
28
Sequence:
Chromosome: III; NC_003281.10 (2151945..2197908)

Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene Conserved secreted protein Neighboring gene GBD/FH3 domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene pre-microRNA mir-229 Neighboring gene pre-microRNA mir-64 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial Neighboring gene ncRNA Neighboring gene Cystatin domain-containing protein

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables protein kinase regulator activity IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in cytosol ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
located_in cytosolic ribosome ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 

General protein information

Preferred Names
TOG domain-containing protein
NP_001367648.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003281.10 Reference assembly

    Range
    2151945..2197908
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001381763.1NP_001367648.1  TOG domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    B3CJ34
    Conserved Domains (2) summary
    COG5181
    Location:19342054
    HSH155; U2 snRNP spliceosome subunit [RNA processing and modification]
    sd00044
    Location:14301456
    HEAT; HEAT repeat [structural motif]