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Y55F3AM.5 SPIN90/Ldb17 leucine-rich domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 190307, updated on 2-Nov-2024

Summary

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Official Symbol
Y55F3AM.5
Official Full Name
SPIN90/Ldb17 leucine-rich domain-containing protein
Primary source
WormBase:WBGene00021923
Locus tag
CELE_Y55F3AM.5
See related
AllianceGenome:WB:WBGene00021923
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable Arp2/3 complex binding activity. Predicted to be involved in endocytosis. Orthologous to human NCKIPSD (NCK interacting protein with SH3 domain). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See Y55F3AM.5 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
8
Sequence:
Chromosome: IV; NC_003282.8 (999214..1003626)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene C2H2-type domain-containing protein Neighboring gene E3 ubiquitin-protein ligase makorin Neighboring gene Mitochondrial inner membrane protease subunit 2;Peptidase S26 domain-containing protein Neighboring gene Ubiquitin carboxyl-terminal hydrolase Neighboring gene Ubiquitin-like-conjugating enzyme ATG3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003282.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables Arp2/3 complex binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in endocytosis IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
SPIN90/Ldb17 leucine-rich domain-containing protein
NP_500021.4
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    999214..1003626
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_067620.6 → NP_500021.4  SPIN90/Ldb17 leucine-rich domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_500021.4

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9N372
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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