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cfap-36 Cilia- and flagella-associated protein 36 [ Caenorhabditis elegans ]

Gene ID: 190931, updated on 2-Nov-2024

Summary

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Official Symbol
cfap-36
Official Full Name
Cilia- and flagella-associated protein 36
Primary source
WormBase:WBGene00022435
Locus tag
CELE_Y108G3AL.3
See related
AllianceGenome:WB:WBGene00022435
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Located in axoneme and ciliary base. Is expressed in ciliated neurons. Orthologous to human CFAP36 (cilia and flagella associated protein 36). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See cfap-36 in Genome Data Viewer
Location:
chromosome: V
Exon count:
7
Sequence:
Chromosome: V; NC_003283.11 (163842..172210, complement)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Serpentine Receptor, class H Neighboring gene Choline/carnitine acyltransferase domain-containing protein Neighboring gene Transcription initiation factor IIB Neighboring gene Pre-mRNA-splicing factor 38 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Whole-Organism Developmental Expression Profiling Identifies RAB-28 as a Novel Ciliary GTPase Associated with the BBSome and Intraflagellar Transport. Jensen VL, et al. PLoS Genet, 2016 Dec. PMID 27930654, Free PMC Article
  2. Screening for cold tolerance genes in C. elegans, whose expressions are affected by anticancer drugs camptothecin and leptomycin B. Okahata M, et al. Sci Rep, 2024 Mar 5. PMID 38443452, Free PMC Article
  3. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
  4. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
  5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by WormBase

Component Evidence Code Pubs
is_active_in axoneme IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in axoneme IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in ciliary base IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in ciliary base IDA
Inferred from Direct Assay
more info
 PubMed 
located_in cilium IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Cilia- and flagella-associated protein 36
NP_001300217.1
  • Confirmed by transcript evidence
NP_503147.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    163842..172210 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_070746.6 → NP_503147.1  Cilia- and flagella-associated protein 36 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_503147.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0A0K3ASD3, Q95Y36
    Conserved Domains (2) summary
    pfam11527
    Location:31 → 136
    ARL2_Bind_BART; The ARF-like 2 binding protein BART
    cl28033
    Location:289 → 546
    Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region

  2. NM_001313288.3 → NP_001300217.1  Cilia- and flagella-associated protein 36 [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q95Y36
    Conserved Domains (1) summary
    PHA03307
    Location:162 → 419
    PHA03307; transcriptional regulator ICP4; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q95Y36.1

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