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scl-19 SCP domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 191308, updated on 2-Nov-2024

Summary

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Official Symbol
scl-19
Official Full Name
SCP domain-containing protein
Primary source
WormBase:WBGene00013971
Locus tag
CELE_ZK384.1
See related
AllianceGenome:WB:WBGene00013971
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be active in extracellular space. Orthologous to several human genes including GLIPR1 (GLI pathogenesis related 1); R3HDML (R3H domain containing like); and CRISPLD1 (cysteine rich secretory protein LCCL domain containing 1). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See scl-19 in Genome Data Viewer
Location:
chromosome: V
Exon count:
4
Sequence:
Chromosome: V; NC_003283.11 (18731991..18732772)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Peptidase A1 domain-containing protein Neighboring gene Peptidase A1 domain-containing protein Neighboring gene SCP domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. DAF-16/FOXO targets genes that regulate tumor growth in Caenorhabditis elegans. Pinkston-Gosse J, et al. Nat Genet, 2007 Nov. PMID 17934462
  2. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
  3. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
  4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Component Evidence Code Pubs
is_active_in extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
SCP domain-containing protein
NP_507654.2
  • Partially confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    18731991..18732772
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_075253.3 → NP_507654.2  SCP domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_507654.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    O62507
    Conserved Domains (1) summary
    smart00198
    Location:21 → 167
    SCP; SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains
Nucleotide Protein
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