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ZK1053.3 LisH domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 191508, updated on 2-Nov-2024

Summary

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Official Symbol
ZK1053.3
Official Full Name
LisH domain-containing protein
Primary source
WormBase:WBGene00014198
Locus tag
CELE_ZK1053.3
See related
AllianceGenome:WB:WBGene00014198
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be involved in autophagy. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See ZK1053.3 in Genome Data Viewer
Location:
chromosome: I
Exon count:
5
Sequence:
Chromosome: I; NC_003279.8 (13246853..13249778)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene SLC41A/MgtE integral membrane domain-containing protein Neighboring gene SET domain-containing protein Neighboring gene ncRNA Neighboring gene pseudo Neighboring gene Calpain catalytic domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003279.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A genome-wide study of PDZ-domain interactions in C. elegans reveals a high frequency of non-canonical binding. Lenfant N, et al. BMC Genomics, 2010 Nov 26. PMID 21110867, Free PMC Article
  2. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Simonis N, et al. Nat Methods, 2009 Jan. PMID 19123269, Free PMC Article
  3. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article
  4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in autophagy IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
LisH domain-containing protein
NP_493324.2
  • Partially confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    13246853..13249778
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_060923.5 → NP_493324.2  LisH domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_493324.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    O62505
Nucleotide Protein
Heading Accession and Version

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