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bli-2 Nematode cuticle collagen N-terminal domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 191611, updated on 2-Nov-2024

Summary

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Official Symbol
bli-2
Official Full Name
Nematode cuticle collagen N-terminal domain-containing protein
Primary source
WormBase:WBGene00000252
Locus tag
CELE_F59E12.12
See related
AllianceGenome:WB:WBGene00000252
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be a structural constituent of collagen and cuticulin-based cuticle. Involved in collagen and cuticulin-based cuticle development. Predicted to be located in external encapsulating structure. Predicted to be part of collagen trimer. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See bli-2 in Genome Data Viewer
Location:
chromosome: II
Exon count:
2
Sequence:
Chromosome: II; NC_003280.10 (5651394..5652434, complement)

Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene BLOC-1-related complex subunit 5 Neighboring gene Anaphase-promoting complex subunit 13 Neighboring gene ncRNA Neighboring gene putative serine/threonine-protein kinase zyg-1 Neighboring gene Bromo domain-containing protein Neighboring gene Alpha-(1,3)-fucosyltransferase fut-3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003280.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tetraspanin protein (TSP-15) is required for epidermal integrity in Caenorhabditis elegans. Moribe H, et al. J Cell Sci, 2004 Oct 15. PMID 15454573
  2. LG II balancer chromosomes in Caenorhabditis elegans: mT1(II;III) and the mIn1 set of dominantly and recessively marked inversions. Edgley ML, et al. Mol Genet Genomics, 2001 Nov. PMID 11713668
  3. Roller mutants of the nematode Caenorhabditis elegans. Higgins BJ, et al. Mol Gen Genet, 1977 Jan 7. PMID 834177
  4. Genetic and Phenotypic Characterization of Roller Mutants of CAENORHABDITIS ELEGANS. Cox GN, et al. Genetics, 1980 Jun. PMID 17249038, Free PMC Article
  5. Cuticle collagen genes. Expression in Caenorhabditis elegans. Johnstone IL. Trends Genet, 2000 Jan. PMID 10637627

See all (20) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables structural constituent of collagen and cuticulin-based cuticle ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables structural constituent of cuticle IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in collagen and cuticulin-based cuticle development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
part_of collagen trimer IEA
Inferred from Electronic Annotation
more info
  
located_in external encapsulating structure ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Nematode cuticle collagen N-terminal domain-containing protein
NP_495104.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003280.10 Reference assembly

    Range
    5651394..5652434 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_062703.5 → NP_495104.1  Nematode cuticle collagen N-terminal domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_495104.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    O01904
    Conserved Domains (3) summary
    pfam01391
    Location:179 → 229
    Collagen; Collagen triple helix repeat (20 copies)
    smart01088
    Location:15 → 60
    Col_cuticle_N; Nematode cuticle collagen N-terminal domain
    PHA03169
    Location:138 → 278
    PHA03169; hypothetical protein; Provisional
Nucleotide Protein
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