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xtr-2 MX region of TRA-2 Related [ Caenorhabditis elegans ]

Gene ID: 192058, updated on 2-Nov-2024

Summary

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Official Symbol
xtr-2
Official Full Name
MX region of TRA-2 Related
Primary source
WormBase:WBGene00006966
Locus tag
CELE_F17A2.1
See related
AllianceGenome:WB:WBGene00006966
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable transmembrane signaling receptor activity. Predicted to be involved in germ-line sex determination. Predicted to be active in plasma membrane. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See xtr-2 in Genome Data Viewer
Location:
chromosome: X
Exon count:
4
Sequence:
Chromosome: X; NC_003284.9 (12315568..12318184)

Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene Histone deacetylase 14 Neighboring gene pseudo Neighboring gene Homeobox protein ceh-40 Neighboring gene Uncharacterized protein Neighboring gene Serpentine receptor class delta-40 Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003284.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Germ-line regulation of the Caenorhabditis elegans sex-determining gene tra-2. Kuwabara PE, et al. Dev Biol, 1998 Dec 1. PMID 9851857
  2. Cell-Specific mRNA Profiling of the Caenorhabditis elegans Somatic Gonadal Precursor Cells Identifies Suites of Sex-Biased and Gonad-Enriched Transcripts. Kroetz MB, et al. G3 (Bethesda), 2015 Oct 23. PMID 26497144, Free PMC Article
  3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables transmembrane signaling receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables transmembrane signaling receptor activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in germ-line sex determination IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in hermaphrodite germ-line sex determination IEA
Inferred from Electronic Annotation
more info
  
involved_in hermaphrodite somatic sex determination IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
MX region of TRA-2 Related
NP_001309688.1
  • Product from WormBase gene class xtr;
    Confirmed by transcript evidence
NP_510059.2
  • Product from WormBase gene class xtr;
    Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003284.9 Reference assembly

    Range
    12315568..12318184
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_077658.4 → NP_510059.2  MX region of TRA-2 Related [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A131MBZ9
    Conserved Domains (1) summary
    pfam04050
    Location:185 → 226
    Upf2; Up-frameshift suppressor 2

  2. NM_001322636.1 → NP_001309688.1  MX region of TRA-2 Related [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A131MD22
    Conserved Domains (1) summary
    pfam04050
    Location:150 → 191
    Upf2; Up-frameshift suppressor 2
Nucleotide Protein
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