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tsp-18 [ Caenorhabditis elegans ]

Gene ID: 192068, updated on 22-Aug-2024

Summary

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Official Symbol
tsp-18
Primary source
WormBase:WBGene00006644
Locus tag
CELE_F59G1.2
See related
AllianceGenome:WB:WBGene00006644
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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Location:
chromosome: II
Exon count:
7
Sequence:
Chromosome: II; NC_003280.10 (5904552..5906385)

Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene LisH domain-containing protein;VQ domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene pre-microRNA lin-4 Neighboring gene Uncharacterized protein Neighboring gene Vacuolar protein sorting-associated protein 35

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003280.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The frataxin-encoding operon of Caenorhabditis elegans shows complex structure and regulation. Vázquez-Manrique RP, et al. Genomics, 2007 Mar. PMID 17174523
  2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
TetraSPanin family
NP_495178.1
  • Product from WormBase gene class tsp;
    Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003280.10 Reference assembly

    Range
    5904552..5906385
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_062777.2 → NP_495178.1  TetraSPanin family [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_495178.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q21052
    Conserved Domains (3) summary
    cd03156
    Location:121 → 247
    uroplakin_I_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), uroplakin_I_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...
    pfam00335
    Location:13 → 275
    Tetraspannin; Tetraspanin family
    pfam14897
    Location:11 → 154
    EpsG; EpsG family
Nucleotide Protein
Heading Accession and Version

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