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IMMP1L inner mitochondrial membrane peptidase subunit 1 [ Homo sapiens (human) ]

Gene ID: 196294, updated on 2-Nov-2024

Summary

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Official Symbol
IMMP1Lprovided by HGNC
Official Full Name
inner mitochondrial membrane peptidase subunit 1provided by HGNC
Primary source
HGNC:HGNC:26317
See related
Ensembl:ENSG00000148950 MIM:612323; AllianceGenome:HGNC:26317
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
IMP1; IMMP1; IMP1-LIKE
Summary
The mitochondrial inner membrane peptidase (IMP) complex generates mature, active proteins in the mitochondrial intermembrane space by proteolytically removing the mitochondrial targeting presequence of nuclear-encoded proteins. IMP1 and IMP2 (IMMP2L; MIM 605977) are the catalytic subunits of the IMP complex (Burri et al., 2005 [PubMed 15814844]).[supplied by OMIM, Sep 2008]
Expression
Ubiquitous expression in fat (RPKM 7.2), prostate (RPKM 6.9) and 25 other tissues See more
Orthologs
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Genomic context

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See IMMP1L in Genome Data Viewer
Location:
11p13
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (31432401..31509622, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (31568225..31645460, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (31453948..31531169, complement)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105376611 Neighboring gene doublecortin domain containing 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:30992221-30992721 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3218 Neighboring gene NANOG hESC enhancer GRCh37_chr11:31145398-31145899 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr11:31326823-31328022 Neighboring gene CYCS pseudogene 25 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4556 Neighboring gene MPRA-validated peak1237 silencer Neighboring gene DnaJ heat shock protein family (Hsp40) member C24 Neighboring gene MPRA-validated peak1238 silencer Neighboring gene MPRA-validated peak1240 silencer Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:31531307-31532196 Neighboring gene HCNE8 enhancer downstream of PAX6 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:31566030-31566638 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:31565420-31566029 Neighboring gene RB enhancer downstream of PAX6 Neighboring gene elongator acetyltransferase complex subunit 4 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4558 Neighboring gene E100 enhancer downstream of PAX6 Neighboring gene PAX6 downstream regulatory region Neighboring gene E60 enhancer downstream of PAX6 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr11:31800787-31801986 Neighboring gene ReSE screen-validated silencer GRCh37_chr11:31814755-31814968 Neighboring gene enhancer region in intron 7 of PAX6 Neighboring gene regulatory region in intron 4 of PAX6 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:31827075-31827744 Neighboring gene PAX6 upstream regulatory region Neighboring gene PAX6 antisense RNA 1 Neighboring gene paired box 6 Neighboring gene PAX6 upstream antisense RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Mitochondrial Protein Quality Control Mechanisms. Jadiya P, et al. Genes (Basel), 2020 May 18. PMID 32443488, Free PMC Article
  2. Genome-wide association and admixture analysis of glaucoma in the Women's Health Initiative. Hoffmann TJ, et al. Hum Mol Genet, 2014 Dec 15. PMID 25027321, Free PMC Article
  3. Mature DIABLO/Smac is produced by the IMP protease complex on the mitochondrial inner membrane. Burri L, et al. Mol Biol Cell, 2005 Jun. PMID 15814844, Free PMC Article
  4. Human chromosome 11 DNA sequence and analysis including novel gene identification. Taylor TD, et al. Nature, 2006 Mar 23. PMID 16554811
  5. Global Interactome Mapping of Mitochondrial Intermembrane Space Proteases Identifies a Novel Function for HTRA2. Botham A, et al. Proteomics, 2019 Dec. PMID 31617661

See all (18) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Observational study of gene-disease association, gene-environment interaction, and pharmacogenomic / toxicogenomic. (HuGE Navigator)
    Title: Variation at the NFATC2 locus increases the risk of thiazolidinedione-induced edema in the Diabetes REduction Assessment with ramipril and rosiglitazone Medication (DREAM) study.
  2. Observational study of gene-disease association. (HuGE Navigator)
    Title: Gene-centric association signals for lipids and apolipoproteins identified via the HumanCVD BeadChip.
Submit: New GeneRIF Correction

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Genome-wide association and admixture analysis of glaucoma in the Women's Health Initiative.
EBI GWAS Catalog

Variation

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See Variation Viewer (GRCh37.p13)

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Clone Names

  • FLJ25059

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
enables serine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
involved_in protein processing involved in protein targeting to mitochondrion IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in signal peptide processing NAS
Non-traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrial inner membrane NAS
Non-traceable Author Statement
more info
 PubMed 
part_of mitochondrial inner membrane peptidase complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of mitochondrial inner membrane peptidase complex NAS
Non-traceable Author Statement
more info
 PubMed 
located_in mitochondrion HTP PubMed 
located_in mitochondrion IDA
Inferred from Direct Assay
more info
  
located_in mitochondrion ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 

General protein information

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Preferred Names
mitochondrial inner membrane protease subunit 1
Names
IMP1 inner mitochondrial membrane peptidase-like
NP_001291203.1
NP_659418.1
XP_005252869.1
XP_011518244.1
XP_011518245.1
XP_011518247.1
XP_011518248.1
XP_011518249.1
XP_016872794.1
XP_016872795.1
XP_047282476.1
XP_047282477.1
XP_054223925.1
XP_054223926.1
XP_054223927.1
XP_054223928.1
XP_054223929.1
XP_054223930.1
XP_054223931.1
XP_054223932.1
XP_054223933.1
XP_054223934.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001304274.2 → NP_001291203.1  mitochondrial inner membrane protease subunit 1

    See identical proteins and their annotated locations for NP_001291203.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate exon in the 5' UTR compared to variant 1. Both variants 1 and 2 encode the same protein.
    Source sequence(s)
    BC023595, DB288287
    Consensus CDS
    CCDS7874.1
    UniProtKB/Swiss-Prot
    D3DQZ7, Q96LU5, Q96SH9
    Related
    ENSP00000435576.1, ENST00000532287.6
    Conserved Domains (1) summary
    cd06530
    Location:33 → 141
    S26_SPase_I; The S26 Type I signal peptidase (SPase; LepB; leader peptidase B; leader peptidase I; EC 3.4.21.89) family members are essential membrane-bound serine proteases that function to cleave the amino-terminal signal peptide extension from proteins that are ...

  2. NM_144981.3 → NP_659418.1  mitochondrial inner membrane protease subunit 1

    See identical proteins and their annotated locations for NP_659418.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript. Both variants 1 and 2 encode the same protein.
    Source sequence(s)
    AK057788, AW295209, DB288287
    Consensus CDS
    CCDS7874.1
    UniProtKB/Swiss-Prot
    D3DQZ7, Q96LU5, Q96SH9
    Related
    ENSP00000278200.1, ENST00000278200.5
    Conserved Domains (1) summary
    cd06530
    Location:33 → 141
    S26_SPase_I; The S26 Type I signal peptidase (SPase; LepB; leader peptidase B; leader peptidase I; EC 3.4.21.89) family members are essential membrane-bound serine proteases that function to cleave the amino-terminal signal peptide extension from proteins that are ...

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    31432401..31509622 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047426521.1 → XP_047282477.1  mitochondrial inner membrane protease subunit 1 isoform X1

    UniProtKB/Swiss-Prot
    D3DQZ7, Q96LU5, Q96SH9

  2. XM_011519947.3 → XP_011518249.1  mitochondrial inner membrane protease subunit 1 isoform X1

    See identical proteins and their annotated locations for XP_011518249.1

    UniProtKB/Swiss-Prot
    D3DQZ7, Q96LU5, Q96SH9
    Conserved Domains (1) summary
    cd06530
    Location:33 → 141
    S26_SPase_I; The S26 Type I signal peptidase (SPase; LepB; leader peptidase B; leader peptidase I; EC 3.4.21.89) family members are essential membrane-bound serine proteases that function to cleave the amino-terminal signal peptide extension from proteins that are ...

  3. XM_011519945.3 → XP_011518247.1  mitochondrial inner membrane protease subunit 1 isoform X1

    See identical proteins and their annotated locations for XP_011518247.1

    UniProtKB/Swiss-Prot
    D3DQZ7, Q96LU5, Q96SH9
    Conserved Domains (1) summary
    cd06530
    Location:33 → 141
    S26_SPase_I; The S26 Type I signal peptidase (SPase; LepB; leader peptidase B; leader peptidase I; EC 3.4.21.89) family members are essential membrane-bound serine proteases that function to cleave the amino-terminal signal peptide extension from proteins that are ...

  4. XM_047426520.1 → XP_047282476.1  mitochondrial inner membrane protease subunit 1 isoform X1

    UniProtKB/Swiss-Prot
    D3DQZ7, Q96LU5, Q96SH9

  5. XM_011519946.3 → XP_011518248.1  mitochondrial inner membrane protease subunit 1 isoform X1

    See identical proteins and their annotated locations for XP_011518248.1

    UniProtKB/Swiss-Prot
    D3DQZ7, Q96LU5, Q96SH9
    Conserved Domains (1) summary
    cd06530
    Location:33 → 141
    S26_SPase_I; The S26 Type I signal peptidase (SPase; LepB; leader peptidase B; leader peptidase I; EC 3.4.21.89) family members are essential membrane-bound serine proteases that function to cleave the amino-terminal signal peptide extension from proteins that are ...

  6. XM_011519942.2 → XP_011518244.1  mitochondrial inner membrane protease subunit 1 isoform X1

    See identical proteins and their annotated locations for XP_011518244.1

    UniProtKB/Swiss-Prot
    D3DQZ7, Q96LU5, Q96SH9
    Conserved Domains (1) summary
    cd06530
    Location:33 → 141
    S26_SPase_I; The S26 Type I signal peptidase (SPase; LepB; leader peptidase B; leader peptidase I; EC 3.4.21.89) family members are essential membrane-bound serine proteases that function to cleave the amino-terminal signal peptide extension from proteins that are ...

  7. XM_017017305.2 → XP_016872794.1  mitochondrial inner membrane protease subunit 1 isoform X1

    UniProtKB/Swiss-Prot
    D3DQZ7, Q96LU5, Q96SH9
    Conserved Domains (1) summary
    cd06530
    Location:33 → 141
    S26_SPase_I; The S26 Type I signal peptidase (SPase; LepB; leader peptidase B; leader peptidase I; EC 3.4.21.89) family members are essential membrane-bound serine proteases that function to cleave the amino-terminal signal peptide extension from proteins that are ...

  8. XM_017017306.2 → XP_016872795.1  mitochondrial inner membrane protease subunit 1 isoform X2

  9. XM_005252812.4 → XP_005252869.1  mitochondrial inner membrane protease subunit 1 isoform X1

    See identical proteins and their annotated locations for XP_005252869.1

    UniProtKB/Swiss-Prot
    D3DQZ7, Q96LU5, Q96SH9
    Conserved Domains (1) summary
    cd06530
    Location:33 → 141
    S26_SPase_I; The S26 Type I signal peptidase (SPase; LepB; leader peptidase B; leader peptidase I; EC 3.4.21.89) family members are essential membrane-bound serine proteases that function to cleave the amino-terminal signal peptide extension from proteins that are ...

  10. XM_011519943.3 → XP_011518245.1  mitochondrial inner membrane protease subunit 1 isoform X1

    See identical proteins and their annotated locations for XP_011518245.1

    UniProtKB/Swiss-Prot
    D3DQZ7, Q96LU5, Q96SH9
    Conserved Domains (1) summary
    cd06530
    Location:33 → 141
    S26_SPase_I; The S26 Type I signal peptidase (SPase; LepB; leader peptidase B; leader peptidase I; EC 3.4.21.89) family members are essential membrane-bound serine proteases that function to cleave the amino-terminal signal peptide extension from proteins that are ...

RNA

  1. XR_242781.4 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    31568225..31645460 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054367955.1 → XP_054223930.1  mitochondrial inner membrane protease subunit 1 isoform X1

    UniProtKB/Swiss-Prot
    D3DQZ7, Q96LU5, Q96SH9

  2. XM_054367952.1 → XP_054223927.1  mitochondrial inner membrane protease subunit 1 isoform X1

    UniProtKB/Swiss-Prot
    D3DQZ7, Q96LU5, Q96SH9

  3. XM_054367954.1 → XP_054223929.1  mitochondrial inner membrane protease subunit 1 isoform X1

    UniProtKB/Swiss-Prot
    D3DQZ7, Q96LU5, Q96SH9

  4. XM_054367957.1 → XP_054223932.1  mitochondrial inner membrane protease subunit 1 isoform X1

    UniProtKB/Swiss-Prot
    D3DQZ7, Q96LU5, Q96SH9

  5. XM_054367950.1 → XP_054223925.1  mitochondrial inner membrane protease subunit 1 isoform X1

    UniProtKB/Swiss-Prot
    D3DQZ7, Q96LU5, Q96SH9

  6. XM_054367953.1 → XP_054223928.1  mitochondrial inner membrane protease subunit 1 isoform X1

    UniProtKB/Swiss-Prot
    D3DQZ7, Q96LU5, Q96SH9

  7. XM_054367959.1 → XP_054223934.1  mitochondrial inner membrane protease subunit 1 isoform X2

  8. XM_054367956.1 → XP_054223931.1  mitochondrial inner membrane protease subunit 1 isoform X1

    UniProtKB/Swiss-Prot
    D3DQZ7, Q96LU5, Q96SH9

  9. XM_054367951.1 → XP_054223926.1  mitochondrial inner membrane protease subunit 1 isoform X1

    UniProtKB/Swiss-Prot
    D3DQZ7, Q96LU5, Q96SH9

  10. XM_054367958.1 → XP_054223933.1  mitochondrial inner membrane protease subunit 1 isoform X1

    UniProtKB/Swiss-Prot
    D3DQZ7, Q96LU5, Q96SH9

RNA

  1. XR_008488358.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q96LU5.1 GenPept UniProtKB/Swiss-Prot:Q96LU5

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