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DNM1P46 dynamin 1 pseudogene 46 [ Homo sapiens (human) ]

Gene ID: 196968, updated on 10-Oct-2023

Summary

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Official Symbol
DNM1P46provided by HGNC
Official Full Name
dynamin 1 pseudogene 46provided by HGNC
Primary source
HGNC:HGNC:35199
See related
Ensembl:ENSG00000290767 AllianceGenome:HGNC:35199
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C15orf51; DNM1DN14@; DNM1DN14.2
Summary
Predicted to enable GTPase activity. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in testis (RPKM 6.5) and fat (RPKM 0.3) See more
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Genomic context

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See DNM1P46 in Genome Data Viewer
Location:
15q26.3
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (99790780..99806927, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (97554570..97570611, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (100330985..100347132, complement)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene myocyte enhancer factor 2A Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6872 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10162 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10163 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:100266134-100266634 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:100266635-100267135 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6873 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6874 Neighboring gene MPRA-validated peak2450 silencer Neighboring gene uncharacterized LOC105371020 Neighboring gene LysM domain containing 4 Neighboring gene uncharacterized LOC124903563 Neighboring gene ReSE screen-validated silencer GRCh37_chr15:100346147-100346518 Neighboring gene RNA, 7SL, cytoplasmic 484, pseudogene Neighboring gene ubiquitin conjugating enzyme E2 Q2 pseudogene Neighboring gene Sharpr-MPRA regulatory region 11003 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10164 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:100456801-100457665 Neighboring gene Sharpr-MPRA regulatory region 10020 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:100515897-100516492 Neighboring gene uncharacterized LOC105371022 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:100516493-100517088 Neighboring gene ADAM metallopeptidase with thrombospondin type 1 motif 17

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. DNM1DN: a new class of paralogous genomic segments (duplicons) with highly conserved copies on chromosomes Y and 15. Makrinou E, et al. Ann Hum Genet, 2004 Mar. PMID 15008788
  2. A germline-specific class of small RNAs binds mammalian Piwi proteins. Girard A, et al. Nature, 2006 Jul 13. PMID 16751776
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Other Names

  • DNM1 pseudogene 46

Clone Names

  • FLJ45937, FLJ54911, MGC119618, DKFZp434I1020

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_003260.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC090825
    Related
    ENST00000341853.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    99790780..99806927 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    97554570..97570611 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_009146.2: Suppressed sequence

    Description
    NG_009146.2: This RefSeq was permanently suppressed because it is now thought that this pseudogene is transcribed.

  2. NM_194295.1: Suppressed sequence

    Description
    NM_194295.1: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6ZS02.1 GenPept UniProtKB/Swiss-Prot:Q6ZS02

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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