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J056_004854 putative U3 small nucleolar RNA-associated protein 13 [ Wallemia ichthyophaga EXF-994 ]

Gene ID: 20377806, updated on 23-Oct-2023

Summary

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Gene symbol
J056_004854
Gene description
putative U3 small nucleolar RNA-associated protein 13
Locus tag
J056_004854
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Wallemia ichthyophaga EXF-994 (strain: EXF-994, type-material: culture from neotype of Wallemia ichthyophaga)
Lineage
Eukaryota; Fungi; Dikarya; Basidiomycota; Wallemiomycotina; Wallemiomycetes; Wallemiales; Wallemiaceae; Wallemia
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Genomic context

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See J056_004854 in Genome Data Viewer
Location:
chromosome: Unknown
Exon count:
4

NW_008806282.1Genomic Context describing neighboring genes Neighboring gene 26S proteasome non-ATPase regulatory subunit 6 Neighboring gene putative translation initiation factor eIF-2B subunit gamma Neighboring gene Histone H2A-beta Neighboring gene Histone H2B

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008806282.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables U3 snoRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 90S preribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of small-subunit processome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative U3 small nucleolar RNA-associated protein 13

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_008806282.1 Reference assembly

    Range
    416835..419582
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009270044.1 → XP_009268319.1  putative U3 small nucleolar RNA-associated protein 13 [Wallemia ichthyophaga EXF-994]

    See identical proteins and their annotated locations for XP_009268319.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A4T0IZ61, R9AFU1
    Conserved Domains (5) summary
    COG2319
    Location:74 → 630
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:356 → 642
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam08625
    Location:659 → 843
    Utp13; Utp13 specific WD40 associated domain
    sd00039
    Location:366 → 404
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:83 → 434
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
Heading Accession and Version

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