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Tacr2 tachykinin receptor 2 [ Mus musculus (house mouse) ]

Gene ID: 21337, updated on 2-Nov-2024

Summary

Official Symbol
Tacr2provided by MGI
Official Full Name
tachykinin receptor 2provided by MGI
Primary source
MGI:MGI:98477
See related
Ensembl:ENSMUSG00000020081 AllianceGenome:MGI:98477
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Skr; Nk2r; Tac2r
Summary
Predicted to enable substance K receptor activity. Involved in regulation of uterine smooth muscle contraction. Predicted to be located in sperm flagellum and sperm head. Predicted to be active in plasma membrane and sperm midpiece. Is expressed in adrenal gland and renal vasculature. Human ortholog(s) of this gene implicated in asthma. Orthologous to human TACR2 (tachykinin receptor 2). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in adrenal adult (RPKM 85.1), colon adult (RPKM 9.6) and 1 other tissue See more
Orthologs
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Genomic context

See Tacr2 in Genome Data Viewer
Location:
10 B4; 10 32.37 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (62088217..62101769)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (62252438..62265990)

Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_26874 Neighboring gene neurogenin 3 Neighboring gene STARR-positive B cell enhancer mm9_chr10:61645889-61646190 Neighboring gene tetraspanin 15 Neighboring gene microRNA 7662 Neighboring gene STARR-seq mESC enhancer starr_26875 Neighboring gene hexokinase 1 Neighboring gene STARR-seq mESC enhancer starr_26881 Neighboring gene CapStarr-seq enhancer MGSCv37_chr10:61802071-61802272 Neighboring gene STARR-positive B cell enhancer ABC_E9791 Neighboring gene CapStarr-seq enhancer MGSCv37_chr10:61803279-61803470 Neighboring gene hexokinase 1, opposite strand Neighboring gene hexokinase domain containing 1 Neighboring gene predicted gene, 30322

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 
  • Targeted (2) 

Pathways from PubChem

General gene information

Markers

Clone Names

  • MGC129144, MGC129145

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables substance K receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables substance K receptor activity IEA
Inferred from Electronic Annotation
more info
 
enables substance K receptor activity ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in intestine smooth muscle contraction IEA
Inferred from Electronic Annotation
more info
 
involved_in intestine smooth muscle contraction ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of luteinizing hormone secretion IEA
Inferred from Electronic Annotation
more info
 
involved_in negative regulation of luteinizing hormone secretion ISO
Inferred from Sequence Orthology
more info
 
involved_in operant conditioning IEA
Inferred from Electronic Annotation
more info
 
involved_in operant conditioning ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of acetylcholine secretion, neurotransmission IEA
Inferred from Electronic Annotation
more info
 
involved_in positive regulation of acetylcholine secretion, neurotransmission ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of flagellated sperm motility IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in positive regulation of flagellated sperm motility IEA
Inferred from Electronic Annotation
more info
 
involved_in positive regulation of flagellated sperm motility ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of monoatomic ion transport IEA
Inferred from Electronic Annotation
more info
 
involved_in positive regulation of monoatomic ion transport ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of uterine smooth muscle contraction IEA
Inferred from Electronic Annotation
more info
 
involved_in positive regulation of uterine smooth muscle contraction ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of vascular permeability IEA
Inferred from Electronic Annotation
more info
 
involved_in positive regulation of vascular permeability ISO
Inferred from Sequence Orthology
more info
 
involved_in prolactin secretion IEA
Inferred from Electronic Annotation
more info
 
involved_in prolactin secretion ISO
Inferred from Sequence Orthology
more info
 
involved_in regulation of uterine smooth muscle contraction IDA
Inferred from Direct Assay
more info
PubMed 
involved_in response to electrical stimulus IEA
Inferred from Electronic Annotation
more info
 
involved_in tachykinin receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
 
located_in sperm flagellum ISO
Inferred from Sequence Orthology
more info
 
located_in sperm head IEA
Inferred from Electronic Annotation
more info
 
located_in sperm head ISO
Inferred from Sequence Orthology
more info
 
is_active_in sperm midpiece IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in sperm midpiece IEA
Inferred from Electronic Annotation
more info
 
located_in sperm midpiece ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
substance-K receptor
Names
7 transmembrane receptor
NK-2 receptor
NK-2R
neurokinin A receptor
tachykinin NK-2 receptor

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_009314.4NP_033340.3  substance-K receptor

    See identical proteins and their annotated locations for NP_033340.3

    Status: VALIDATED

    Source sequence(s)
    AC127417, AK033443, BC106960
    Consensus CDS
    CCDS35919.1
    UniProtKB/Swiss-Prot
    P30549
    UniProtKB/TrEMBL
    Q3KP20, Q8BZV9
    Related
    ENSMUSP00000020278.6, ENSMUST00000020278.6
    Conserved Domains (2) summary
    pfam00001
    Location:50307
    7tm_1; 7 transmembrane receptor (rhodopsin family)
    cl21561
    Location:42168
    7tm_4; Olfactory receptor

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000076.7 Reference GRCm39 C57BL/6J

    Range
    62088217..62101769
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)