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Chrm5 cholinergic receptor, muscarinic 5 [ Mus musculus (house mouse) ]

Gene ID: 213788, updated on 2-Nov-2024

Summary

Official Symbol
Chrm5provided by MGI
Official Full Name
cholinergic receptor, muscarinic 5provided by MGI
Primary source
MGI:MGI:109248
See related
Ensembl:ENSMUSG00000074939 AllianceGenome:MGI:109248
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
m5; M5R; AChR-M5
Summary
Predicted to enable G protein-coupled acetylcholine receptor activity. Acts upstream of or within dopamine transport and transmission of nerve impulse. Predicted to be located in postsynaptic membrane. Predicted to be active in dendrite; plasma membrane; and synapse. Is expressed in central nervous system and retina. Orthologous to human CHRM5 (cholinergic receptor muscarinic 5). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Low expression observed in reference dataset See more
Orthologs
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Genomic context

See Chrm5 in Genome Data Viewer
Location:
2 E3; 2 57.02 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (112306055..112365487, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (112478733..112536361, complement)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer mm9_chr2:112219168-112219469 Neighboring gene STARR-positive B cell enhancer ABC_E5959 Neighboring gene katanin p80 subunit B like 1 Neighboring gene STARR-positive B cell enhancer ABC_E3389 Neighboring gene STARR-positive B cell enhancer ABC_E11150 Neighboring gene STARR-positive B cell enhancer ABC_E4487 Neighboring gene STARR-seq mESC enhancer starr_05388 Neighboring gene ER membrane protein complex subunit 7 Neighboring gene predicted gene, 22676 Neighboring gene apoptosis, caspase activation inhibitor Neighboring gene STARR-positive B cell enhancer mm9_chr2:112443695-112443995 Neighboring gene STARR-seq mESC enhancer starr_05389 Neighboring gene STARR-seq mESC enhancer starr_05390 Neighboring gene ryanodine receptor 3 Neighboring gene STARR-seq mESC enhancer starr_05392 Neighboring gene STARR-seq mESC enhancer starr_05393 Neighboring gene STARR-seq mESC enhancer starr_05394 Neighboring gene STARR-seq mESC enhancer starr_05395 Neighboring gene predicted gene, 26505 Neighboring gene transmembrane and coiled-coil domains 5B

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 
  • Targeted (5)  1 citation

Pathways from PubChem

General gene information

Markers

Gene Ontology Provided by MGI

Component Evidence Code Pubs
is_active_in dendrite IBA
Inferred from Biological aspect of Ancestor
more info
 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in postsynaptic membrane IEA
Inferred from Electronic Annotation
more info
 
is_active_in synapse IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
muscarinic acetylcholine receptor M5
Names
muscarinic acetylcholine receptor 5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_205783.3NP_991352.2  muscarinic acetylcholine receptor M5

    See identical proteins and their annotated locations for NP_991352.2

    Status: VALIDATED

    Source sequence(s)
    AL691423, AL731840
    Consensus CDS
    CCDS16556.1
    UniProtKB/Swiss-Prot
    A2AHU3, Q0VBI9, Q920H4
    Related
    ENSMUSP00000097185.3, ENSMUST00000099589.4
    Conserved Domains (3) summary
    cd15300
    Location:31225
    7tmA_mAChR_M5; muscarinic acetylcholine receptor subtype M5, member of the class A family of seven-transmembrane G protein-coupled receptors
    cd14964
    Location:438463
    7tm_GPCRs; TM helix 6 [structural motif]
    cl28897
    Location:435514
    7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    112306055..112365487 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)